REDCapTidieR - v1.2.4

What's Changed

• Combine Checkboxes Concatenation Refactor by @rsh52 in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/226
• add option in combine_checkboxes() to paste checkboxes when multiple selected by @d-morrison in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/225
• Update skimr.R links to skimr documentation by @elinw in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/227

New Contributors

• @d-morrison made their first contribution in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/225
• @elinw made their first contribution in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/227

Full Changelog: https://github.com/CHOP-CGTInformatics/REDCapTidieR/compare/v1.2.3...v1.2.4

Scientific Software - Peer-reviewed - HTML
Published by rsh52 7 months ago

REDCapTidieR - v1.2.3

What's Changed

• Fix check_extra_field_values assignment by @ezraporter in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/222
• Fix DAG export bug by @ezraporter in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/223

Full Changelog: https://github.com/CHOP-CGTInformatics/REDCapTidieR/compare/v1.2.2...v1.2.3

Scientific Software - Peer-reviewed - HTML
Published by ezraporter 9 months ago

REDCapTidieR - v1.2.2

What's Changed

• Add missing variable labels by @ezraporter in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/218
• Add DAG Labels by @rsh52 in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/217
  • Special thanks to @d-morrison for pointing this one out to us
• CRAN 1.2.2 Prep by @rsh52 in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/219

Full Changelog: https://github.com/CHOP-CGTInformatics/REDCapTidieR/compare/v1.2.1...v1.2.2

Scientific Software - Peer-reviewed - HTML
Published by rsh52 11 months ago

REDCapTidieR - v1.2.1

What's Changed

• Add factor levels to redcap_events col by @rsh52 in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/211
• Fix failure when forms is used for projects with a stand-alone record id instrument by @ezraporter in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/213

Full Changelog: https://github.com/CHOP-CGTInformatics/REDCapTidieR/compare/v1.2.0...v1.2.1

Scientific Software - Peer-reviewed - HTML
Published by rsh52 about 1 year ago

REDCapTidieR - v1.2.0

What's Changed

• combine_checkboxes by @rsh52 in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/196
• Update documentation, add example by @rsh52 in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/198
• Mixed Structure Data Loss Bug Resolution by @rsh52 in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/201
• Update REDCapR to 1.2.0, update guess_max to Inf by @rsh52 in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/202
• Update linkarms, Add eventname to redcap_events Output in Longitudinal Supertibbles by @rsh52 in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/203
• Proposal: a vignette about labelled vectors by @larmarange in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/208
• Missing Data Fix, Partial Keys Fix by @rsh52 in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/205
• CRAN 1.2 Prep by @rsh52 in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/209

New Contributors

• @larmarange made their first contribution in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/208

Full Changelog: https://github.com/CHOP-CGTInformatics/REDCapTidieR/compare/v1.1.1...v1.2.0

Scientific Software - Peer-reviewed - HTML
Published by rsh52 over 1 year ago

REDCapTidieR - v1.1.1

What's Changed

• Fix non-chr/numeric casting in apply_labs_haven() by @ezraporter in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/190

Full Changelog: https://github.com/CHOP-CGTInformatics/REDCapTidieR/compare/v1.1.0...v1.1.1

Scientific Software - Peer-reviewed - HTML
Published by ezraporter almost 2 years ago

REDCapTidieR - v1.1.0

What's Changed

• Citations formatting, authors by @mikemahoney218 in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/174
• Add Mixed Repeat/Nonrepeat Instrument Support by @rsh52 in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/177
• Fix supertibble label by @ezraporter in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/179
• Add haven option to raw_or_label by @ezraporter in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/180
• Handle Missing Data Codes by @ezraporter in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/182
• Form Complete Metadata Column for Supertibble by @rsh52 in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/188

New Contributors

• @mikemahoney218 made their first contribution in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/174

Full Changelog: https://github.com/CHOP-CGTInformatics/REDCapTidieR/compare/v1.0.0-joss...v1.1.0

Scientific Software - Peer-reviewed - HTML
Published by rsh52 almost 2 years ago

REDCapTidieR - v1.0.0-joss

What's Changed

• Joss paper by @rsh52 in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/166
• JOSS Feedback Round 1 by @rsh52 in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/170
• Joss Feedback 2 by @rsh52 in https://github.com/CHOP-CGTInformatics/REDCapTidieR/pull/173

Full Changelog: https://github.com/CHOP-CGTInformatics/REDCapTidieR/compare/v1.0.0...v1.0.0-joss

Version of REDCapTidieR as accepted by JOSS

Scientific Software - Peer-reviewed - HTML
Published by rsh52 about 2 years ago

REDCapTidieR - Release v1.0.0

Version 1.0.0 (Released 2023-11-08)

This package has been considered stable for months now with no new issues reported, and so should be reflected in the major version number.

Minor Updates - Updated openxlsx2 API calls to coincide with v1.0 - Internal cleaning and tidying of documentation - pkgdown site updates - Migration of some vignettes over to articles

Scientific Software - Peer-reviewed - HTML
Published by rsh52 over 2 years ago

REDCapTidieR - Release v0.4.1

Version 0.4.1 (Released 2023-08-15)

Miscellaneous

• Updated test suite to be compatible with REDCapR 1.2.0

Scientific Software - Peer-reviewed - HTML
Published by ezraporter over 2 years ago

REDCapTidieR - Release v0.4.0

Version 0.4.0 (Released 2023-06-04)

New Features

• New function add_skimr_metadata() added allowing for summary statistics to be added to supertibble metadata
• New function write_redcap_xlsx() added allowing users to export supertibbles to XLSX format
• read_redcap() now supports Data Access Groups (DAGs)
  • New argument available to read_redcap(): export_data_access_groups

Bug Fixes

• Fixed a bug where REDCapR API error messages weren't being returned from REDCapTidieR

Miscellaneous

• All deprecated functions have been officially retired and removed from the package

Scientific Software - Peer-reviewed - HTML
Published by rsh52 over 2 years ago

REDCapTidieR - Release v0.3.0

Version 0.3.0 (Released 2023-03-17)

New Features

• read_redcap() now supports projects with repeating events which introduced a breaking change to data tibble column names
  • redcap_repeat_instance is now redcap_form_instance
  • redcap_event_instance has been added to denote repeating events

Performance Improvements and Enhancements

• Improved error message suite:
  • Helpful error message provided for various conditions related to REDCap API calls
  • Helpful error messages added for checks across all exported functions
  • Unexpected error messages provided with direction to submitting bug reports
  • Improved error messages for label parsing
  • Added select_choices_and_calculations exported by the REDCap API to redcap_metadata tibble
• Improved process for adding/updating httptest mocks

Bug Fixes

• Fixed a bug where the suppress_redcapr_messages argument for read_redcap() was not working appropriately
• Fixed a bug where read_redcap() would fail when select_choices_and_calculations was missing whitespace after commas (discovered by @camcaan)
• Fixed a bug where read_redcap() would fail for projects with a multiple choice field having duplicate values with the same label
  • Added a warning when REDCapTidieR detects this
• Fixed a bug where empty rows would appear in data tibbles in longitudinal REDCap exports for events containing a mix of empty and filled forms
• Fixed a bug where the forms specification in read_redcap() may lead to incorrect removal of data for databases with repeating events

Scientific Software - Peer-reviewed - HTML
Published by rsh52 almost 3 years ago

REDCapTidieR - Release v0.2.0

Version 0.2.0 (Released 2022-12-07)

New Features

• Function name changes:
  • read_redcap_tidy() is now read_redcap()
  • extract_table() is now extract_tibble()
  • extract_tables() is now extract_tibbles()
  • bind_table() is now bind_tibbles()
  • All old functions are still supported and throw a deprecation warning
• Instrument/form-level metadata included in supertibble output:
  • redcap_form_label: The instrument’s human-readable label
  • redcap_metadata: REDCap metadata associated with the instrument (derived from REDCapR::redcap_metadata_read())
  • redcap_events: Events and arms associated with this instrument (for longitudinal projects only)
  • data_rows, data_cols: Row and column counts of redcap_data
  • data_size: Size of the redcap_data tibble in memory
  • data_na_pct: The percentage of missing data in the redcap_data tibble
• New make_labelled() function that attaches variable labels using the labelled package
• New arguments available read_redcap():
  • forms: Allows reading specific instruments instead of the whole project
  • export_survey_fields: Allows for export of redcap_survey_timestamp and redcap_survey_identifier columns from survey-enabled REDCap instruments (TRUE by default)

Performance Improvements and Enhancements

• Improved execution time by >2.5X by optimizing internal functions check_repeat_and_nonrepeat(), distill_*_table_long(), and multi_choice_to_labels()
• New informative warning and error messages, now rendered using the cli package
• Tests and vignettes now use httptest to mock and cache REDCap API calls
• Implemented GitHub Actions link check
• Replaced deprecated .data pronoun in tidyselect expressions

Bug Fixes

• Fixed a bug in which similarly named variables could be duplicated under some circumstances
• Order of instruments in the supertibble is now the same as the order of instruments in REDCap
• Fixed an issue in which extract_*() functions under some circumstances returned NULL instead of the expected tibbles

Scientific Software - Peer-reviewed - HTML
Published by rsh52 about 3 years ago

REDCapTidieR - Release v0.1.3

Version 0.1.3 (Released 2022-10-03)

Bug Fixes

• Fixed a bug where an internal function, clean_redcap, may not correctly assign variables across instruments to their appropriate tables in cases of similar prefixes
• Fixed a roxygen2 tag where internal check_* functions were being exported

Documentation Updates

• Minor DESCRIPTION and README updates
• renv updates
• Update pkgdown site

Scientific Software - Peer-reviewed - HTML
Published by rsh52 over 3 years ago

REDCapTidieR - Release v0.1.2

Version 0.1.2 (Released 2022-09-20)

Documentation Updates

• Addresses feedback received from CRAN
• DESCRIPTION file fixes for undirected quotation marks (e.g. REDCap to 'REDCap')
• Fix quotations in @examples tags for bind_tables and extract_table
• Update pkgdown site

Scientific Software - Peer-reviewed - HTML
Published by rsh52 over 3 years ago

REDCapTidieR - Release v0.1.1

Version 0.1.1 (Released 2022-09-19)

Documentation Updates

• Addresses feedback received from CRAN
• DESCRIPTION file fixes for spell check notes
• roxygen2 examples updated

Scientific Software - Peer-reviewed - HTML
Published by rsh52 over 3 years ago

REDCapTidieR - Release v0.1.0

Version 0.1.0 (Released 2022-09-15)

New Features

• Introduces read_redcap_tidy(), bind_tables(), extract_table(), and extract_tables() with documentation

Scientific Software - Peer-reviewed - HTML
Published by rsh52 over 3 years ago