https://github.com/aaronmussig/gtdb-msa-resample
Randomly sample MSAs based on GTDB taxonomy.
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (6.0%) to scientific vocabulary
Repository
Randomly sample MSAs based on GTDB taxonomy.
Basic Info
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 1
Metadata Files
README.md
gtdb-msa-resample
Randomly sample MSAs based on GTDB taxonomy.
This program was developed for a specific use case and isn't intended for general use.
Installation
It is strongly recommended to install this program in a new conda or virtual environment (venv).
This program requires Python 3.8 or later.
bash
python -m pip install https://github.com/aaronmussig/gtdb-msa-resample/archive/refs/tags/v0.0.1.zip
Usage
To view the available options, run:
bash
gmr --help
Owner
- Name: Aaron Mussig
- Login: aaronmussig
- Kind: user
- Location: Brisbane, Australia
- Company: Australian Centre for Ecogenomics
- Twitter: aaronmussig
- Repositories: 7
- Profile: https://github.com/aaronmussig
Bioinformatics PhD student at the University of Queensland. Python and Rust enthusiast.
GitHub Events
Total
- Release event: 1
- Push event: 1
- Create event: 2
Last Year
- Release event: 1
- Push event: 1
- Create event: 2
Issues and Pull Requests
Last synced: about 1 year ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
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Dependencies
- typer >=0.12.5