Data

Tools

Indexes

Applications

Experiments

Open Source Science

albofr

alboFr: Get French Data on Tiger Mosquito Colonisation

https://github.com/e-kotov/albofr

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 5 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (13.4%) to scientific vocabulary

Keywords

aedes-albopictus data france tiger-mosquito
Last synced: 4 months ago · JSON representation ·

Repository

alboFr: Get French Data on Tiger Mosquito Colonisation

Basic Info
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 1
Topics
aedes-albopictus data france tiger-mosquito
Created 10 months ago · Last pushed 10 months ago
Metadata Files
Readme Changelog License Citation Codemeta

README.md

alboFr

Lifecycle: experimental CRAN status R-CMD-check DOI <!-- badges: end -->

The goal of alboFr is to retrieve the latest online data from https://signalement-moustique.anses.fr/signalement_albopictus/colonisees and convert them into an sf object.

Installation

You can install the development version of alboFr from R-universe with:

r install.packages("alboFr", repos = c("https://e-kotov.r-universe.dev", "https://cloud.r-project.org" ) )

You can also install the development version of alboFr from GitHub with:

``` r

install.packages("pak")

pak::pak("e-kotov/alboFr") ```

Example with sf data type

The package only has one function to get the data:

``` r library(alboFr)

xsf <- gettigermosquitocolonisationinfrance(output = "sf") ```

r head(x_sf) 

Simple feature collection with 6 features and 1 field
Geometry type: POLYGON
Dimension:     XY
Bounding box:  xmin: 1.195249 ymin: 42.99451 xmax: 7.835923 ymax: 48.64427
Geodetic CRS:  WGS 84
  toujours_signaler                       geometry
1              TRUE POLYGON ((7.77076 48.49202,...
2              TRUE POLYGON ((1.987127 42.99451...
3              TRUE POLYGON ((1.584032 44.76673...
4              TRUE POLYGON ((1.249545 44.34751...
5              TRUE POLYGON ((2.566791 43.02245...
6              TRUE POLYGON ((3.502814 43.97531...

The data can then be plotted:

``` r library(ggplot2) p <- ggplot(xsf) + geomsf(aes(fill = toujourssignaler), col = NA) + facetwrap(~toujours_signaler) p

ggsave(

filename = "man/figures/map.png",

plot = p,

width = 5,

height = 4,

units = "in",

dpi = 300

)

```

Finally the data can be saved to a GeoPackage file:

r library(sf) st_write(x_sf, "tiger_mosquito_colonisation_in_france.gpkg")

Example without sf data type

You do not have to have sf package installed to use {alboFr}. You can just retrieve the data in geojson format and save it directly to disk bypassing the sf object creation:

r x_geojson <- get_tiger_mosquito_colonisation_in_france(output = "geojson") writeLines(x_geojson, "tiger_mosquito_colonisation_in_france.geojson")

Data license

The original data does not have a well defined license, but the legal matters regarding this data can be found here: https://signalement-moustique.anses.fr/signalement_albopictus/mentionslegales.

Data archive

The data provider does not supply data versioning, but you can find the daily automatic snapshots of the data in this GitHub repository https://github.com/e-kotov/alboFr-data-archive or at Zenodo https://doi.org/10.5281/zenodo.14914293.

Citation

To cite package ‘alboFr’ in publications use:

Kotov E (2025). alboFr: Get French Data on Tiger Mosquito Colonisation. https://github.com/e-kotov/alboFr.

BibTeX:

@Manual{albofr,
  title = {alboFr: Get French Data on Tiger Mosquito Colonisation},
  author = {Egor Kotov},
  year = {2025},
  url = {https://github.com/e-kotov/alboFr},
}

Owner

  • Name: Egor Kotov
  • Login: e-kotov
  • Kind: user
  • Location: Rostock, Germany
  • Company: Max Planck Institute for Demographic Research

Spatial Data Scientist, Doctoral Reseacher at @MPIDR and UPF

Citation (CITATION.cff) 

# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "alboFr" in publications use:'
type: software
license: MIT
title: 'alboFr: Get French Data on Tiger Mosquito Colonisation'
version: 0.0.0.9000
abstract: Get French Data on Tiger Mosquito (Aedes Albopictus) colonisation in France
  from the online map at <https://signalement-moustique.anses.fr/signalement_albopictus/colonisees>.
authors:
- family-names: Kotov
  given-names: Egor
  email: kotov.egor@gmail.com
  orcid: https://orcid.org/0000-0001-6690-5345
preferred-citation:
  type: manual
  title: 'alboFr: Get French Data on Tiger Mosquito Colonisation'
  authors:
  - family-names: Kotov
    given-names: Egor
    email: kotov.egor@gmail.com
    orcid: https://orcid.org/0000-0001-6690-5345
  year: '2025'
  url: https://github.com/e-kotov/alboFr
contact:
- family-names: Kotov
  given-names: Egor
  email: kotov.egor@gmail.com
  orcid: https://orcid.org/0000-0001-6690-5345
references:
- type: software
  title: RcppSimdJson
  abstract: 'RcppSimdJson: ''Rcpp'' Bindings for the ''simdjson'' Header-Only Library
    for ''JSON'' Parsing'
  notes: Imports
  url: https://github.com/eddelbuettel/rcppsimdjson/
  repository: https://CRAN.R-project.org/package=RcppSimdJson
  authors:
  - family-names: Eddelbuettel
    given-names: Dirk
  - family-names: Knapp
    given-names: Brendan
  - family-names: Lemire
    given-names: Daniel
  year: '2025'
- type: software
  title: rlang
  abstract: 'rlang: Functions for Base Types and Core R and ''Tidyverse'' Features'
  notes: Imports
  url: https://rlang.r-lib.org
  repository: https://CRAN.R-project.org/package=rlang
  authors:
  - family-names: Henry
    given-names: Lionel
    email: lionel@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2025'
- type: software
  title: ggplot2
  abstract: 'ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics'
  notes: Suggests
  url: https://ggplot2.tidyverse.org
  repository: https://CRAN.R-project.org/package=ggplot2
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: Chang
    given-names: Winston
    orcid: https://orcid.org/0000-0002-1576-2126
  - family-names: Henry
    given-names: Lionel
  - family-names: Pedersen
    given-names: Thomas Lin
    email: thomas.pedersen@posit.co
    orcid: https://orcid.org/0000-0002-5147-4711
  - family-names: Takahashi
    given-names: Kohske
  - family-names: Wilke
    given-names: Claus
    orcid: https://orcid.org/0000-0002-7470-9261
  - family-names: Woo
    given-names: Kara
    orcid: https://orcid.org/0000-0002-5125-4188
  - family-names: Yutani
    given-names: Hiroaki
    orcid: https://orcid.org/0000-0002-3385-7233
  - family-names: Dunnington
    given-names: Dewey
    orcid: https://orcid.org/0000-0002-9415-4582
  - family-names: Brand
    given-names: Teun
    name-particle: van den
    orcid: https://orcid.org/0000-0002-9335-7468
  year: '2025'
- type: software
  title: quarto
  abstract: 'quarto: R Interface to ''Quarto'' Markdown Publishing System'
  notes: Suggests
  url: https://quarto-dev.github.io/quarto-r/
  repository: https://CRAN.R-project.org/package=quarto
  authors:
  - family-names: Allaire
    given-names: JJ
    email: jj@posit.co
    orcid: https://orcid.org/0000-0003-0174-9868
  - family-names: Dervieux
    given-names: Christophe
    email: cderv@posit.co
    orcid: https://orcid.org/0000-0003-4474-2498
  year: '2025'
- type: software
  title: sf
  abstract: 'sf: Simple Features for R'
  notes: Suggests
  url: https://r-spatial.github.io/sf/
  repository: https://CRAN.R-project.org/package=sf
  authors:
  - family-names: Pebesma
    given-names: Edzer
    email: edzer.pebesma@uni-muenster.de
    orcid: https://orcid.org/0000-0001-8049-7069
  year: '2025'

CodeMeta (codemeta.json) 

{
  "@context": "https://doi.org/10.5063/schema/codemeta-2.0",
  "@type": "SoftwareSourceCode",
  "identifier": "alboFr",
  "description": "Get French Data on Tiger Mosquito (Aedes Albopictus) colonisation in France from the online map at <https://signalement-moustique.anses.fr/signalement_albopictus/colonisees>.",
  "name": "alboFr: Get French Data on Tiger Mosquito Colonisation",
  "license": "https://spdx.org/licenses/MIT",
  "version": "0.0.0.9000",
  "programmingLanguage": {
    "@type": "ComputerLanguage",
    "name": "R",
    "url": "https://r-project.org"
  },
  "runtimePlatform": "R version 4.4.2 (2024-10-31)",
  "author": [
    {
      "@type": "Person",
      "givenName": "Egor",
      "familyName": "Kotov",
      "email": "kotov.egor@gmail.com",
      "@id": "https://orcid.org/0000-0001-6690-5345"
    }
  ],
  "maintainer": [
    {
      "@type": "Person",
      "givenName": "Egor",
      "familyName": "Kotov",
      "email": "kotov.egor@gmail.com",
      "@id": "https://orcid.org/0000-0001-6690-5345"
    }
  ],
  "softwareSuggestions": [
    {
      "@type": "SoftwareApplication",
      "identifier": "ggplot2",
      "name": "ggplot2",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=ggplot2"
    },
    {
      "@type": "SoftwareApplication",
      "identifier": "quarto",
      "name": "quarto",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=quarto"
    },
    {
      "@type": "SoftwareApplication",
      "identifier": "sf",
      "name": "sf",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=sf"
    }
  ],
  "softwareRequirements": {
    "1": {
      "@type": "SoftwareApplication",
      "identifier": "RcppSimdJson",
      "name": "RcppSimdJson",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=RcppSimdJson"
    },
    "2": {
      "@type": "SoftwareApplication",
      "identifier": "rlang",
      "name": "rlang",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=rlang"
    },
    "SystemRequirements": null
  },
  "fileSize": "72.608KB",
  "citation": [
    {
      "@type": "SoftwareSourceCode",
      "datePublished": "2025",
      "author": [
        {
          "@type": "Person",
          "givenName": "Egor",
          "familyName": "Kotov",
          "email": "kotov.egor@gmail.com",
          "@id": "https://orcid.org/0000-0001-6690-5345"
        }
      ],
      "name": "alboFr: Get French Data on Tiger Mosquito Colonisation",
      "url": "https://github.com/e-kotov/alboFr"
    }
  ],
  "codeRepository": "https://github.com/e-kotov/alboFr",
  "readme": "https://github.com/e-kotov/alboFr/blob/main/README.md",
  "developmentStatus": "https://lifecycle.r-lib.org/articles/stages.html#experimental",
  "keywords": [
    "data",
    "france",
    "aedes-albopictus",
    "tiger-mosquito"
  ]
}

GitHub Events

Total
  • Release event: 1
  • Push event: 16
  • Create event: 2
Last Year
  • Release event: 1
  • Push event: 16
  • Create event: 2

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Dependencies

.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v4 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action v4.5.0 composite
  • actions/checkout v4 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
DESCRIPTION cran
  • RcppSimdJson * imports
  • purrr * imports
  • sf * imports
  • ggplot2 * suggests
  • quarto * suggests