workshop-project-organization
Project Organization and Data Management
Science Score: 67.0%
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✓CITATION.cff file
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✓codemeta.json file
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✓.zenodo.json file
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✓DOI references
Found 3 DOI reference(s) in README -
✓Academic publication links
Links to: plos.org -
○Academic email domains
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○Scientific vocabulary similarity
Low similarity (6.1%) to scientific vocabulary
Repository
Project Organization and Data Management
Basic Info
- Host: GitHub
- Owner: izaakm
- License: cc0-1.0
- Default Branch: main
- Size: 77.1 KB
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- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
Project Organization and Data Management
The goal of this workshop is to:
- address day-to-day organization challenges associated with computational projects
- propose a reasonable strategy for organizing computational projects
This workshop pulls heavily from the ideas presented by Noble (2009).
Unfortunately, for students who are preparing for a research career, [the typical bioinformatics and computational biology] curriculum fails to address many of the day-to-day organizational challenges associated with performing computational experiments....
The purpose of [this workshop!] is to describe one good strategy for carrying out computational experiments. I will not describe profound issues such as how to formulate hypotheses, design experiments, or draw conclusions. Rather, I will focus on relatively mundane issues such as organizing files and directories and documenting progress. These issues are important because poor organizational choices can lead to significantly slower research progress. I do not claim that the strategies I outline here are optimal. (Noble, 2009)
Topics
- Overview
- Getting started
- A simple example
- Documenting your project
- Adding complexity
- Automate it
- Extra features
Acknowledgements
- A Quick Guide to Organizing Computational Biology Projects
- Cookiecutter Data Science
- Data Carpentries' workshop "Project Organization and Management for Genomics" (Copyright (c) The Carpentries) which is made available under the Creative Commons Attribution license 4.0.
References
- Noble WS (2009) A Quick Guide to Organizing Computational Biology Projects. PLOS Computational Biology 5(7): e1000424. https://doi.org/10.1371/journal.pcbi.1000424
Owner
- Name: Izaak M.
- Login: izaakm
- Kind: user
- Company: Oak Ridge National Laboratory
- Website: https://izaakm.github.io/
- Twitter: izaakmiller
- Repositories: 1
- Profile: https://github.com/izaakm
Postdoc in the Computational and Predictive Biology group at ORNL.
Citation (CITATION.cff)
# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!
cff-version: 1.2.0
title: Project Organization & Data Management
authors:
- given-names: John
family-names: Miller
affiliation: 'University of Tennessee, Knoxville'
orcid: 'https://orcid.org/0000-0002-6114-5401'
repository-code: 'https://github.com/izaakm/workshop-project-organization'
license: CC-BY-1.0
date-released: '2024-03-01'