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loris

Loris: Database and Analysis application for a Drosophila Lab (or any lab)

https://github.com/neuralsignal/loris

Science Score: 54.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (8.8%) to scientific vocabulary

Keywords

data-analysis data-structures database datajoint flask neuroscience
Last synced: 6 months ago · JSON representation ·

Repository

Loris: Database and Analysis application for a Drosophila Lab (or any lab)

Basic Info
  • Host: GitHub
  • Owner: neuralsignal
  • License: mit
  • Language: Python
  • Default Branch: master
  • Homepage:
  • Size: 16.1 MB
Statistics
  • Stars: 0
  • Watchers: 3
  • Forks: 2
  • Open Issues: 1
  • Releases: 1
Topics
data-analysis data-structures database datajoint flask neuroscience
Created about 6 years ago · Last pushed almost 2 years ago
Metadata Files
Readme License Citation

README.md

Loris

DOI

Database and Analysis application for a Drosophila Lab (or any lab)

Loris is in development with core features still being tested and added. Documentation for the different features will be added soon.

Requirements

  • Pip
  • Git

Pulling the source code

Pull the recent version of Loris: git pull https://github.com/gucky92/loris.git

Installation of API

Install using the pip command: cd loris pip install --user .

Running App after API Installation

Create your own config.json file. There is a template file called _config.json.

If you do not have a running MySQL database yet, you can install a running SQL database by cloning a mysql-docker git repository and running docker-compose: git clone https://github.com/gucky92/mysql-docker cd mysql-docker/slim sudo docker-compose up -d

To run the Loris app (in the main loris directory): conda activate loris # activate the environment if you haven't done so python run.py The app should now be running on port 1234.

Owner

  • Name: Matthias Christenson
  • Login: neuralsignal
  • Kind: user

PhD, Columbia University | Computational Neuroscientist | ML and Data Scientist

Citation (CITATION.cff) 

cff-version: 1.2.0
title: Loris
message: >-
  Data Management and Analysis platform for experimental
  research labs
type: software
authors:
  - given-names: Matthias
    family-names: Christenson
    orcid: 'https://orcid.org/0000-0003-4858-6541'
    email: gucky92@protonmail.com
identifiers:
  - type: doi
    value: 10.5281/zenodo.7108882
repository-code: 'https://github.com/gucky92/loris'
url: 'https://github.com/gucky92/loris'
keywords:
  - database
  - neuroscience
  - machine learning
license: MIT

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Dependencies

requirements.txt pypi
  • cloudpickle ==1.5.0
  • datajoint-gucky >=0.13.0
  • flask ==1.1.2
  • flask-login ==0.5.0
  • flask-wtf ==0.14.3
  • gitpython ==3.0.5
  • graphviz ==0.13.2
  • markdown ==3.2.2
  • numpy >=1.16.5
  • pandas >=1.1.3
  • plotly ==4.5.1
  • pyarrow *
  • pymysql ==0.9.3
  • python-rapidjson >=1.0
  • scipy >=1.5.2
  • slackclient ==2.7.1
  • sshtunnel ==0.1.5
  • wtforms ==2.2.1
setup.py pypi