Data

Tools

Indexes

Applications

Experiments

Open Source Science

multiversehabitat

This multiverseHabitat repository supports the manuscript entitled: "A Habitat Selection Multiverse Reveals Largely Consistent Results Despite a Multitude of Analysis Options" by Benjamin Michael Marshall and Alexander Brad Duthie

https://github.com/benmmarshall/multiversehabitat

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 3 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (8.5%) to scientific vocabulary

Keywords

animal-movement movement-ecology simulation
Last synced: 6 months ago · JSON representation

Repository

This multiverseHabitat repository supports the manuscript entitled: "A Habitat Selection Multiverse Reveals Largely Consistent Results Despite a Multitude of Analysis Options" by Benjamin Michael Marshall and Alexander Brad Duthie

Basic Info
  • Host: GitHub
  • Owner: BenMMarshall
  • License: gpl-3.0
  • Language: HTML
  • Default Branch: mainV2
  • Homepage:
  • Size: 315 MB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 3
Topics
animal-movement movement-ecology simulation
Created over 3 years ago · Last pushed over 1 year ago
Metadata Files
Readme License Citation

README.md

multiverseHabitat

DOI

The files included in this multiverseHabitat repository were used to generate the results for a manuscript entitled: "A Habitat Selection Multiverse Reveals Largely Consistent Results Despite a Multitude of Analysis Options" by Benjamin Michael Marshall and Alexander Brad Duthie. The code and targets workflow include the necessary components to simulate the data and run all analyses described in the manuscript.

To re-run this project's workflow, ensure all packages listed in the _targets.R file are installed. Then use targets package functions tar_make() or tar_make_clustermq(), as seen in the run.R file. The workflow is slow to complete and at times can be memory intensive.

The R folder contains all custom functions used in the generation of data and the multiverse analysis. The _targets folder stores all intermediate objects that are created during the running of the workflow, as described by the _targets.R file. The data folder contains outputted habitat preference estimates, as well as the results from the Bayesian regression models. The notebook folder contains external images, figures, and model outputs used in the manuscript describing the results along with the manuscript drafts. notebook also contains notes and miscellaneous drafts that is not used in the final workflow.

Owner

  • Name: Benjamin Michael Marshall
  • Login: BenMMarshall
  • Kind: user

GitHub Events

Total
  • Push event: 2
Last Year
  • Push event: 2

Dependencies

.github/workflows/update-citation-cff.yaml actions
  • actions/checkout v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
DESCRIPTION cran
  • R >= 3.5.0 depends
  • abmAnimalMovement * imports
  • knitr * suggests
  • rmarkdown * suggests
  • testthat >= 3.0.0 suggests