Viash

Viash: A meta-framework for building reusable workflow modules - Published in JOSS (2024)

https://github.com/viash-io/viash

Science Score: 98.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
Found CITATION.cff file
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codemeta.json file
Found codemeta.json file
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.zenodo.json file
Found .zenodo.json file
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DOI references
Found 4 DOI reference(s) in README and JOSS metadata
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Academic publication links
Links to: joss.theoj.org
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JOSS paper metadata
Published in Journal of Open Source Software

Keywords from Contributors

benchmarking mesh

Last synced: 6 months ago · JSON representation ·

Repository

script + metadata = standalone component

Basic Info

Host: GitHub
Owner: viash-io
License: gpl-3.0
Language: Scala
Default Branch: main
Homepage: https://viash.io
Size: 22.4 MB

Statistics

Stars: 43
Watchers: 3
Forks: 5
Open Issues: 123
Releases: 74

Created about 6 years ago · Last pushed 6 months ago

Metadata Files

Readme Changelog Contributing License Citation

Viash: A meta-framework for building reusable workflow modules

Viash helps you turn a script (Bash/R/Python/Scala/JavaScript) into a reusable component. By providing some meta-data regarding its functionality, a runner and an engine on which you want to run the software, Viash can help you:

Wrap your script in an executable with a CLI and –help functionality,
Seamlessly execute your component natively on the host platform or in a Docker container
Combine multiple components in a Nextflow pipeline, and
Unit-test your component to ensure that it works at all times.

Documentation

The Viash documentation is available online at viash.io.

License

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.

Owner

Name: viash.io
Login: viash-io
Kind: organization
Location: Belgium

Website: https://viash.io
Repositories: 6
Profile: https://github.com/viash-io

JOSS Publication

Viash: A meta-framework for building reusable workflow modules

Published

January 24, 2024

DOI

10.21105/joss.06089

Volume 9, Issue 93, Page 6089

Authors

Robrecht Cannoodt

Data Intuitive, Lebbeke, Belgium, Data Mining and Modelling for Biomedicine group, VIB Center for Inflammation Research, Ghent, Belgium, Department of Applied Mathematics, Computer Science, and Statistics, Ghent University, Ghent, Belgium

Hendrik Cannoodt