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troika-toolbox

MATLAB scripts for analyzing Troika SPT data

https://github.com/edinosma/troika-toolbox

Science Score: 67.0%

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    Found 1 DOI reference(s) in README
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    Low similarity (5.5%) to scientific vocabulary

Keywords

matlab msdanalyzer track-analysis troika
Last synced: 6 months ago · JSON representation ·

Repository

MATLAB scripts for analyzing Troika SPT data

Basic Info
  • Host: GitHub
  • Owner: edinosma
  • License: gpl-3.0
  • Language: MATLAB
  • Default Branch: master
  • Homepage:
  • Size: 42 KB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 3
Topics
matlab msdanalyzer track-analysis troika
Created over 2 years ago · Last pushed almost 2 years ago
Metadata Files
Readme License Citation

README.md

troika-toolbox: MATLAB scripts for analyzing Troika SPT data

DOI

A small set of programs dedicated to analyzing Troika's trjR variables.

What's in the box

~

| Name | Description | |:--------:|:-----------:| |troikaEnum|Find when a track starts, ends, and how long it lasted for.| |troikaPrecision|Calculate Troika's precision in the context of your camera.| |trjR_separator|Separates combined trjR files into parts with the same number of trajectories.|

converters/

| Name | Description | |:--------:|:-----------:| |toMsdanalyzer|Convert trjRs into tracks for msdanalyzer.| |toTrack_analysis|Convert trjRs into tracks for track_analysis.|

functions/

| Name | Description | |:--------:|:-----------:| |traj_filt|Get tracks that last x frames or greater. Also interpolate between lost frames of tracking.| |traj_firstframe|Removes all tracks present since the first frame.| |traj_sorter|Separates "fast" and "slow" tracks.|

graphs/

| Name | Description | |:--------:|:-----------:| |displacements|Plot the displacement of tracks vs. time-lag.| |trackEvolutions|Plot how tracks change over time.| |vanHove|Plot and fit a van Hove correlation graph.| |fitRec|Plot the reconstructed van Hove correlation graph from Track Analysis.|

msd/

N/A

Owner

  • Name: Edin O.
  • Login: edinosma
  • Kind: user

Citation (CITATION.cff) 

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: troika-toolbox
message: >-
  If you use this software, please cite it using the
  metadata from this file.
type: software
authors:
  - given-names: Edin
    family-names: Osmanbasic
    email: eosmanbasic1@gsu.edu
    affiliation: Georgia State University
    orcid: 'https://orcid.org/0009-0004-6128-0875'
repository-code: 'https://github.com/edinosma/troika-toolbox'
abstract: MATLAB scripts for analyzing Troika SPT data
keywords:
  - MATLAB
  - Troika
license: GPL-3.0

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