science_concierge_manuscript

LaTeX document and PDF for Science Concierge Manuscript

https://github.com/titipata/science_concierge_manuscript

Science Score: 51.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
  • DOI references
  • Academic publication links
    Links to: arxiv.org
  • Committers with academic emails
    2 of 3 committers (66.7%) from academic institutions
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (4.8%) to scientific vocabulary

Keywords from Contributors

article doi medline-xml pmid pubmed-central pubmed-parser
Last synced: 7 months ago · JSON representation ·

Repository

LaTeX document and PDF for Science Concierge Manuscript

Basic Info
Statistics
  • Stars: 1
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created about 10 years ago · Last pushed almost 10 years ago
Metadata Files
Readme Citation

README.md

Science Concierge Manuscript

This is a repository for Science Concierge manuscript, an algorithm behind www.scholarfy.net (also see scaling version of Scholarfy at pubmed.scholarfy.net). See the full repository at titipata/science_concierge and the Arxiv article here.

Build manuscript

In build manuscript, you can simply use Atom text editor to compile tex file. You need LaTeX extension installed. In Atom editor, open science_concierge.tex and run Packages > LaTeX > Build to build pdf file or Packages > LaTeX > Clean to clean all created temporary files. We already attached built pdf in the repository.

Owner

  • Name: Titipat Achakulvisut
  • Login: titipata
  • Kind: user
  • Location: Bangkok, Thailand
  • Company: Mahidol University

Applied ML & Science of Science @biodatlab Mahidol University | Former @KordingLab UPenn, intern @allenai, organizer/co-founder @neuromatch

Citation (citations.bib)

@book{manning2008introduction,
  title={Introduction to information retrieval},
  author={Manning, Christopher D and Raghavan, Prabhakar and Sch{\"u}tze, Hinrich and others},
  volume={1},
  number={1},
  year={2008},
  publisher={Cambridge university press Cambridge}
}

@article{chavalarias2010science,
  title={Science mapping analysis characterizes 235 biases in biomedical research},
  author={Chavalarias, David and Ioannidis, John PA},
  journal={Journal of Clinical Epidemiology},
  volume={63},
  number={11},
  pages={1205--1215},
  year={2010},
  publisher={Elsevier}
}

@article{petersen2011quantitative,
  title={Quantitative and empirical demonstration of the Matthew effect in a study of career longevity},
  author={Petersen, Alexander M and Jung, Woo-Sung and Yang, Jae-Suk and Stanley, H Eugene},
  journal={Proceedings of the National Academy of Sciences},
  volume={108},
  number={1},
  pages={18--23},
  year={2011},
  publisher={National Acad Sciences}
}

@inproceedings{li2010contextual,
  title={A contextual-bandit approach to personalized news article recommendation},
  author={Li, Lihong and Chu, Wei and Langford, John and Schapire, Robert E},
  booktitle={Proceedings of the 19th International Conference on World Wide Web},
  pages={661--670},
  year={2010},
  organization={ACM}
}

@article{bell2007lessons,
  title={Lessons from the Netflix prize challenge},
  author={Bell, Robert M and Koren, Yehuda},
  journal={ACM SIGKDD Explorations Newsletter},
  volume={9},
  number={2},
  pages={75--79},
  year={2007},
  publisher={ACM}
}

@MISC{Ali11parallelcollaborative,
    author = {Muqeet Ali and Christopher C. Johnson and Alex K. Tang},
    title = {Parallel Collaborative Filtering for Streaming Data},
    year = {2011}
}

@article{yoneya2007pure,
  title={PURE: a PubMed article recommendation system based on content-based filtering},
  author={Yoneya, Takashi and Mamitsuka, Hiroshi},
  journal={Genome informatics},
  volume={18},
  pages={267--276},
  year={2007}
}

@inproceedings{gipp2009scienstein,
  title={Scienstein: A research paper recommender system},
  author={Gipp, Bela and Beel, J{\"o}ran and Hentschel, Christian},
  booktitle={Proceedings of the International Conference on Emerging Trends in Computing (ICETiC’09)},
  pages={309--315},
  year={2009}
}

@inproceedings{wang2011collaborative,
  title={Collaborative topic modeling for recommending scientific articles},
  author={Wang, Chong and Blei, David M},
  booktitle={Proceedings of the 17th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining},
  pages={448--456},
  year={2011},
  organization={ACM}
}

@article{rocchio1971relevance,
  title={Relevance feedback in information retrieval},
  author={Rocchio, Joseph John},
  year={1971},
  publisher={Prentice-Hall, Englewood Cliffs NJ}
}

@misc{shakhnarovish2005indyk,
  title={Indyk, Nearest-Neighbor Methods in Learning and Vision},
  author={Shakhnarovish, Darrell},
  year={2005},
  publisher={The MIT Press}
}

@article{porter1980algorithm,
  title={An algorithm for suffix stripping},
  author={Porter, Martin F},
  journal={Program},
  volume={14},
  number={3},
  pages={130--137},
  year={1980},
  publisher={MCB UP Ltd}
}

@article{landauer1998introduction,
  title={An introduction to latent semantic analysis},
  author={Landauer, Thomas K and Foltz, Peter W and Laham, Darrell},
  journal={Discourse Processes},
  volume={25},
  number={2-3},
  pages={259--284},
  year={1998},
  publisher={Taylor \& Francis}
}

@misc{bishop2006pattern,
  title={Pattern Recognition and Machine Learning},
  author={Bishop, Christopher M},
  year={2006},
  publisher={Springer Science Business Media}
}

@article{van2008visualizing,
  title={Visualizing data using t-SNE},
  author={Van der Maaten, Laurens and Hinton, Geoffrey},
  journal={Journal of Machine Learning Research},
  volume={9},
  number={2579-2605},
  pages={85},
  year={2008}
}


@article{aho1976finding,
  title={On finding lowest common ancestors in trees},
  author={Aho, Alfred V and Hopcroft, John E and Ullman, Jeffrey D},
  journal={SIAM Journal on Computing},
  volume={5},
  number={1},
  pages={115--132},
  year={1976},
  publisher={SIAM}
}

@article{blei2003latent,
  title={Latent dirichlet allocation},
  author={Blei, David M and Ng, Andrew Y and Jordan, Michael I},
  journal={The Journal of Machine Learning Research},
  volume={3},
  pages={993--1022},
  year={2003},
  publisher={JMLR. org}
}

@article{lancichinetti2015high,
  title={High-reproducibility and high-accuracy method for automated topic classification},
  author={Lancichinetti, Andrea and Sirer, M Irmak and Wang, Jane X and Acuna, Daniel and K{\"o}rding, Konrad and Amaral, Lu{\'\i}s A Nunes},
  journal={Physical Review X},
  volume={5},
  number={1},
  pages={011007},
  year={2015},
  publisher={APS}
}

@inproceedings{hoffman2010online,
  title={Online learning for latent dirichlet allocation},
  author={Hoffman, Matthew and Bach, Francis R and Blei, David M},
  booktitle={Advances in Neural Information Processing Systems},
  pages={856--864},
  year={2010}
}

@article{mikolov2013efficient,
  title={Efficient estimation of word representations in vector space},
  author={Mikolov, Tomas and Chen, Kai and Corrado, Greg and Dean, Jeffrey},
  journal={arXiv preprint arXiv:1301.3781},
  year={2013}
}

@inproceedings{pennington2014glove,
  title={Glove: Global Vectors for Word Representation.},
  author={Pennington, Jeffrey and Socher, Richard and Manning, Christopher D},
  booktitle={EMNLP},
  volume={14},
  pages={1532--1543},
  year={2014}
}

@book{friedman2001elements,
  title={The elements of statistical learning},
  author={Friedman, Jerome and Hastie, Trevor and Tibshirani, Robert},
  volume={1},
  year={2001},
  publisher={Springer series in statistics Springer, Berlin}
}

@inproceedings{lavrenko2001relevance,
  title={Relevance based language models},
  author={Lavrenko, Victor and Croft, W Bruce},
  booktitle={Proceedings of the 24th annual international ACM SIGIR conference on Research and development in information retrieval},
  pages={120--127},
  year={2001},
  organization={ACM}
}

@article{lee2005empirical,
  title={An empirical evaluation of models of text document similarity},
  author={Lee, M and Pincombe, Brandon and Welsh, Matthew},
  journal={Cognitive Science},
  year={2005}
}

@techreport{pincombe2004comparison,
  title={Comparison of human and latent semantic analysis (LSA) judgements of pairwise document similarities for a news corpus},
  author={Pincombe, Brandon},
  year={2004},
  institution={DTIC Document}
}

@article{lipscomb2000medical,
  title={Medical subject headings (MeSH)},
  author={Lipscomb, Carolyn E},
  journal={Bulletin of the Medical Library Association},
  volume={88},
  number={3},
  pages={265},
  year={2000},
  publisher={Medical Library Association}
}

@inproceedings{wesley2016babel,
  title={Babel: A Platform for Facilitating Research in Scholarly Article Discovery},
  author={Wesley-Smith, Ian and West, Jevin D},
  booktitle={Proceedings of the 25th International Conference Companion on World Wide Web},
  pages={389--394},
  year={2016},
  organization={International World Wide Web Conferences Steering Committee}
}

@misc{hopcroftfoundations,
  title={Foundations of Data Science, 2014},
  author={Hopcroft, John and Kannan, Ravindran}
}

@inproceedings{mikolov2013distributed,
  title={Distributed representations of words and phrases and their compositionality},
  author={Mikolov, Tomas and Sutskever, Ilya and Chen, Kai and Corrado, Greg S and Dean, Jeff},
  booktitle={Advances in neural information processing systems},
  pages={3111--3119},
  year={2013}
}

GitHub Events

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Last Year

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Last synced: 10 months ago

All Time
  • Total Commits: 23
  • Total Committers: 3
  • Avg Commits per committer: 7.667
  • Development Distribution Score (DDS): 0.217
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
titipata t****a@u****u 18
Bluenex t****r@g****m 3
Daniel Acuna d****a@n****u 2
Committer Domains (Top 20 + Academic)

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  • Total pull requests: 0
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  • Average time to close pull requests: N/A
  • Total issue authors: 1
  • Total pull request authors: 0
  • Average comments per issue: 1.5
  • Average comments per pull request: 0
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Past Year
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  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
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  • Average comments per issue: 0
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  • titipata (2)
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