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intanluthilab

https://github.com/luthilab/intanluthilab

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

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    CITATION.cff file
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    DOI references
    Found 4 DOI reference(s) in README
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    Links to: pubmed.ncbi, ncbi.nlm.nih.gov
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    Low similarity (8.7%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

Basic Info
  • Host: GitHub
  • Owner: luthilab
  • Language: MATLAB
  • Default Branch: main
  • Size: 291 KB
Statistics
  • Stars: 3
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 4 years ago · Last pushed about 1 year ago
Metadata Files
Readme Citation

README.md

IntanLuthiLab

Welcome to the IntanLuthiLab repository.

This repository belongs to the laboratory of Prof. Anita Lüthi, Department of Fundamental Neurosciences, Faculty of Biology and Medicine, University of Lausanne, Switzerland.

https://dnf-unil.ch/group/gaining-insight-into-the-roles-of-sleep-for-neuronal-function

We share openly here the softwares developed in our lab for recording and scoring electrophysiology data with the Intan recording system. Our hardware setup contains the following parts from IntanTech (https://intantech.com/):

  • C3100 RHD USB interface board
  • C3211 RHD 1-ft (0.3 m) ultra thin SPI interface cable
  • C3314 RHD 32-channel headstage
  • C3334 RHD 16-channel headstage

The three softwares proposed here are:

Symply2ReadForSleepData_Acquisition

Used for recording up to 8 animals at a time for long periods.

VeryScore2ForSleep_Scoring

Used to open, visualize and score the data in three main vigilent state (NREMS, REMS, Wakefulness) obtained with Symply2Read.

YpnosForClosedLoopExperiments

Used for recording data and automatic detection of the three vigilent states (NREMS, REMS, Wakefulness) using the EMG and EEG signals. This version is related to the experiments conducted in the https://doi.org/10.1038/s41593-024-01822-0 paper.

Example of an analysis

This is a little example of the architecture for an analysis on these bt.mat files. We provide as well some useful analysis and ease of life functions that we wrote and use in the lab. The analysis and the functions are normally documented and commented to understand their purpose.

Romain Cardis 2021

Citation:

If you use these softwares and publish work using them, thank you for citing us in your methods.

Our papers in which we used these tools:

Thalamic reticular control of local sleep in mouse sensory cortex (2018)

https://pubmed.ncbi.nlm.nih.gov/30583750/

Cortico-autonomic local arousals and heightened somatosensory arousability during NREMS of mice in neuropathic pain (2021)

https://pubmed.ncbi.nlm.nih.gov/34227936/

Noradrenergic circuit control of non-REM sleep substates (2021)

https://pubmed.ncbi.nlm.nih.gov/34648731/

Infraslow noradrenergic locus coeruleus activity fluctuations are gatekeepers of the NREM-REM sleep cycle (2024)

https://doi.org/10.1038/s41593-024-01822-0

Owner

  • Login: luthilab
  • Kind: user

Citation (CITATION.cff) 

IntanLuthiLab for mouse sleep recording, scoring and analysis using the Intantech recording equipment. 2021.
Romain Cardis, Sandro Lecci and Anita Lüthi
https://github.com/Romain2-5/IntanLuthiLab

Symply2Read v1.0, Romain Cardis & Anita Lüthi, 2019
https://github.com/Romain2-5/IntanLuthiLab

VeryScore2 v1.2, Romain Cardis & Anita Lüthi, 2018
https://github.com/Romain2-5/IntanLuthiLab

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