gatk-parabricks_benchmarking_gadi_nci
Optimising for computational performance of germline SNP calling workflows for Parabricks (NVIDIA) and GATK (Broad Institute) at Gadi@NCI
https://github.com/southern-cross-plant-science/gatk-parabricks_benchmarking_gadi_nci
Science Score: 54.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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✓Academic publication links
Links to: zenodo.org -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (1.9%) to scientific vocabulary
Repository
Optimising for computational performance of germline SNP calling workflows for Parabricks (NVIDIA) and GATK (Broad Institute) at Gadi@NCI
Basic Info
- Host: GitHub
- Owner: Southern-Cross-Plant-Science
- License: gpl-2.0
- Language: Shell
- Default Branch: main
- Size: 1.73 MB
Statistics
- Stars: 0
- Watchers: 0
- Forks: 1
- Open Issues: 0
- Releases: 6
Metadata Files
README.md
GATK-parabricks benchmarking on Gadi @ National Computational Infrastructure (NCI)
Purpose of benchmarking
To optimise for computational performance of germline SNP calling workflows for Parabricks (NVIDIA) and GATK (Broad Institute) at Gadi@NCI.
The 2 benchmarking pipelines are included in this repository, as well the report document.
Owner
- Name: Southern Cross Plant Science
- Login: Southern-Cross-Plant-Science
- Kind: organization
- Email: ramil.mauleon@scu.edu.au
- Repositories: 2
- Profile: https://github.com/Southern-Cross-Plant-Science
Citation (CITATION.cff)
cff-version: 1.2.0 message: "If you use this software, please cite it as below." authors: - family-names: "Locedie" given-names: "Mansueto" orcid: "https://orcid.org/0000-0000-0000-0000" title: "GATK-Parabricks Benchmarking @Gadi NCI" version: 0.1.0 doi: 10.5281/zenodo.8348885 date-released: 2023-09-30 url: "https://doi.org/10.5281/zenodo.8348885"