nzilbb.ag

Implementations of an Annotation Graph API for linguistic annotations.

Annotation Graphs are a data structure conceived by Steven Bird and Mark Liberman: (http://lanl.arxiv.org/abs/cs/9907003) (http://xxx.lanl.gov/PS_cache/cs/pdf/9903/9903003v1.pdf)

The structure is designed to be a tool-independent way of representing annotated linguistic data, and essentially defines an Annotation Graph as a directed acyclic graph where: * nodes are 'anchors' that represent a point in time (in seconds) or a point in a text (in characters) (although the time/character offset label is optional), and * edges are 'annotations' which have a 'label' (the content of the annotation) and a 'type' (the kind of annotation, analogous with an 'tier' or 'layer')

This particular implementation, which is used for LaBB-CAT, developed by the NZILBB, includes extra features that allow tier hierarchies and parent/child constraints to be defined. More details on extra features are available in http://dx.doi.org/10.1016/j.csl.2017.01.004

API documentation is available at https://nzilbb.github.io/ag/

Format Conversion

Apart from use within LaBB-CAT, the object model can be used for other purposes like format conversion, e.g. * vtt-to-textgrid - a utility for converting subtitles downloaded from YouTube to Praat TextGrids * trs-to-eaf - a utility for converting Transcriber files to ELAN files

These use the serializers/deserializers in the formatter directory of this repository to read a file in one format, convert it to an annotation graph, and then write that graph out as a file in another format. As pointed out by Cochran et al. (2007 - Report from TILR Working Group 1 : Tools interoperability and input/output formats) this saves having order n² explicit conversion algorithms between formats; only order n format conversions are required.

This exemplifies an approach to linguistic data interoperability called the interlingua philosophy on interoperability by Witt et al. (2009) and uses annotation graphs as an 'interlingua' similar to work by Schmidt et al. (2008), except that rather using a third file format as a persistent intermediary, the annotation graph models of the linguistic data are ephemeral, existing in memory only for the duration of the conversion.

More format conversions are available here

Building from source

Prerequisites

• The JDK for at least Java 11 sudo apt install openjdk-11-jdk-headless
• Maven sudo apt install maven

Build nzilbb.ag.jar and also all format, annotator, and transcriber modules

mvn package

Build only nzilbb.ag.jar

mvn package -pl :nzilbb.ag

Build all transcriber modules only

mvn package -pl :nzilbb.transcriber

Build a specific transcriber module

mvn package -pl :nzilbb.transcriber.deepspeech

etc...

Run all unit tests

mvn test

Build documentation site

The documentation site, deployed in the docs subdirectory, includes:

• General information about annotation graphs, and the nzilbb.ag implementation.
• Javadoc class documentation.
• Documentation about sub-modules, including format converters, etc.

The command to ensure a clean build of the documentation is:

mvn clean package site site:deploy -Dmaven.test.skip

Deploying to OSSRH

OSSRH is the central Maven repository where nzilbb.ag modules are deployed (published).

There are two type of deployment:

• snapshot: a transient deployment that can be updated during development/testing
• release: an official published version that cannot be changed once it's deployed

A snapshot deployment is done when the module version (version tag in pom.xml) ends with -SNAPSHOT. Otherwise, any deployment is a release.

Snapshot Deployment

To perform a snapshot deployment:

1. Ensure the version in pom.xml is suffixed with -SNAPSHOT
2. Execute the command:
   mvn clean deploy -pl :nzilbb.ag

Release Deployment

To perform a release deployment:

1. Ensure the version in pom.xml isn't suffixed with -SNAPSHOT e.g. use something like the following command from within the ag directory:
   mvn versions:set -DnewVersion=1.1.0 -pl :nzilbb.ag
2. Execute the command:
   mvn clean deploy -P release -pl :nzilbb.ag
3. Happy with everything? Complete the release with: mvn nexus-staging:release -P release -pl :nzilbb.ag (Or Publish via web interface: https://central.sonatype.com/publishing/deployments)\ Otherwise: mvn nexus-staging:drop -P release -pl :nzilbb.ag ...and start again.
4. Regenerate the citation file: mvn cff:create -pl :nzilbb.ag
5. Commit/push all changes and create a release in GitHub

To release another module (e.g. formatters, annotators, etc.)

1. Ensure the version in pom.xml isn't suffixed with -SNAPSHOT
   NB Don't use mvn versions:set for this if the module is a nzilbb.formatter, because it will fix versions in nzilbb.converter projects, which are manually set in their pom.xml
2. Execute the command:
   mvn clean deploy -P release -pl :nzilbb.formatter.praat
3. Happy with everything? Complete the release with: mvn nexus-staging:release -P release -pl :nzilbb.formatter.praat Otherwise: mvn nexus-staging:drop -P release -pl :nzilbb.formatter.praat ...and start again.
4. Start a new .SNAPSHOT version.
   NB Don't use mvn versions:set for this if the module is a nzilbb.formatter, because it will fix versions in nzilbb.converter projects, which are manually set in their pom.xml