https://github.com/aces/cbrain
CBRAIN is a flexible Ruby on Rails framework for accessing and processing of large data on high-performance computing infrastructures.
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
17 of 47 committers (36.2%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (9.9%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
CBRAIN is a flexible Ruby on Rails framework for accessing and processing of large data on high-performance computing infrastructures.
Basic Info
Statistics
- Stars: 78
- Watchers: 12
- Forks: 51
- Open Issues: 211
- Releases: 23
Topics
Metadata Files
README.md
CBRAIN
CBRAIN is a collaborative, web-enabled grid platform built to facilitate research on large, distributed datasets by managing user access, transfer, caching and provenence for distributed data, as well as mediating interactions with high-performance computing centres (HPCs).
NeuroHub Portal
The NeuroHub Portal is an alternative interface to CBRAIN. It provides a few special capabilities that are not accessible in CBRAIN, while also lacking many of CBRAIN's features (because it is fairly new, as of August 2020). Users can switch back and forth between the two interfaces, since they share the same authentication and database systems.
CBRAIN (and the alternative NeuroHub interface) consists of two Ruby on Rails Applications: BrainPortal and Bourreau
BrainPortal
BrainPortal is the frontend of the CBRAIN architecture. It is a Rails application that provides a web-based graphical user interface to CBRAIN. Users can upload, tag and search their files. They can launch compute-intensive processing jobs on remote High-Performance Computing (HPC) sites. Remote file repositories can be created to provide files from any network-enabled system.
Bourreau
Bourreau is the backend of the CBRAIN architecture. It is a Rails application that is not meant to serve the user directly. It interacts with the CBRAIN Brainportal application using XML, acting as an intermediary between user requests through BrainPortal and the cluster management software running on High-Performance Computing sites. A Bourreau receives requests to launch a processing task, sets up the required working directories, runs the process and then sends information about any newly created files back to BrainPortal. A Bourreau can also be queried about the jobs that are currently running on the HPC where it resides.
For more information
CBRAIN is extensively documented in its Wiki.
Owner
- Name: ACElab
- Login: aces
- Kind: organization
- Location: Montreal, Quebec, Canada
- Website: http://mcin.ca/
- Repositories: 75
- Profile: https://github.com/aces
McGill Centre for Integrative Neuroscience (MCIN) - Alan C. Evans, Ph.D., Principal Investigator
GitHub Events
Total
- Issues event: 109
- Watch event: 8
- Issue comment event: 268
- Push event: 147
- Pull request review comment event: 191
- Pull request review event: 206
- Pull request event: 107
- Gollum event: 96
- Fork event: 7
- Create event: 2
Last Year
- Issues event: 109
- Watch event: 8
- Issue comment event: 268
- Push event: 147
- Pull request review comment event: 191
- Pull request review event: 206
- Pull request event: 107
- Gollum event: 96
- Fork event: 7
- Create event: 2
Committers
Last synced: 9 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Pierre Rioux | p****x@m****a | 2,967 |
| tsherif | t****f@b****7 | 804 |
| Natacha Beck | n****k@m****a | 721 |
| angela | a****a@b****7 | 320 |
| MontrealSergiy | s****y@g****m | 227 |
| Remi Bernard | r****d@m****a | 182 |
| candicecz | c****e@g****m | 134 |
| Andrew Doyle | d****w@g****m | 129 |
| Tristan A.A | t****g@m****a | 102 |
| nkassis | n****s@b****7 | 89 |
| Tristan Glatard | t****d@m****a | 69 |
| Greg Kiar | g****7@g****m | 24 |
| Ehsan Afkhami | e****i@d****a | 21 |
| anda | a****a@b****7 | 19 |
| anton | a****n@b****7 | 16 |
| Shawn T. Brown | s****n@m****a | 16 |
| Nicolas Kassis | n****s@g****m | 15 |
| Andrew Doyle | a****e@a****a | 15 |
| mathieu | m****u@b****7 | 14 |
| glatard | g****d@c****r | 13 |
| Ehsan Afkhami | e****i@g****m | 8 |
| cbrain | c****n@b****7 | 5 |
| Ehsan Afkhami | e****i@d****a | 5 |
| bryancaron | 6****n | 4 |
| Ehsan Afkhami | e****i@d****a | 3 |
| rtu | r****u@b****7 | 3 |
| Juan Prieto | j****b@g****m | 3 |
| Muhamad Asif | m****m@g****d | 2 |
| Freedisch | 8****h | 2 |
| Armin Taheri | a****i@g****m | 2 |
| and 17 more... | ||
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 5 months ago
All Time
- Total issues: 194
- Total pull requests: 159
- Average time to close issues: over 1 year
- Average time to close pull requests: 4 months
- Total issue authors: 10
- Total pull request authors: 8
- Average comments per issue: 1.11
- Average comments per pull request: 2.61
- Merged pull requests: 99
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 58
- Pull requests: 81
- Average time to close issues: 23 days
- Average time to close pull requests: 16 days
- Issue authors: 5
- Pull request authors: 6
- Average comments per issue: 0.81
- Average comments per pull request: 2.48
- Merged pull requests: 52
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- prioux (105)
- natacha-beck (59)
- MontrealSergiy (18)
- bryancaron (3)
- remibernard (2)
- NishchayRajput (2)
- xmpham (2)
- dariusvalevicius (1)
- ramou (1)
- Najmahan (1)
Pull Request Authors
- MontrealSergiy (81)
- natacha-beck (35)
- prioux (26)
- axif0 (6)
- remibernard (4)
- Freedisch (4)
- shrutiparmar2003 (2)
- eafkhami (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- database_cleaner >= 0 development
- factory_bot_rails >= 0 development
- hirb >= 0 development
- listen ~> 3.0.5 development
- looksee >= 0 development
- pry >= 0 development
- pry-byebug >= 0 development
- rails-controller-testing >= 0 development
- rspec >= 0 development
- rspec-activemodel-mocks >= 0 development
- rspec-collection_matchers >= 0 development
- rspec-mocks >= 0 development
- rspec-rails >= 0 development
- wirble >= 0 development
- actionpack-xml_parser >= 0
- activemodel-serializers-xml >= 0
- activeresource >= 0
- aws-sdk-s3 ~> 1
- bcrypt_pbkdf >= 0
- ed25519 >= 0
- json-schema >= 0
- log4r >= 0
- mysql2 < 0.5
- net-sftp >= 0
- net-ssh >= 0
- pbkdf2-ruby >= 0
- puma >= 0
- rails ~> 5.0.6
- rbnacl >= 0
- rbnacl-libsodium >= 0
- sys-proctable ~> 1.2.0
- cbrain_client >= 5.1.3 development
- coffee-rails >= 0 development
- database_cleaner >= 0 development
- factory_bot_rails >= 0 development
- hirb >= 0 development
- listen ~> 3.0.5 development
- looksee >= 0 development
- pry >= 0 development
- pry-byebug >= 0 development
- rails-controller-testing >= 0 development
- rspec >= 0 development
- rspec-activemodel-mocks >= 0 development
- rspec-collection_matchers >= 0 development
- rspec-mocks >= 0 development
- rspec-rails >= 0 development
- therubyracer >= 0 development
- uglifier >= 0 development
- wirble >= 0 development
- actionpack-xml_parser >= 0
- activemodel-serializers-xml >= 0
- activeresource >= 0
- aws-sdk-s3 ~> 1
- bcrypt_pbkdf >= 0
- ed25519 >= 0
- jquery-form-rails >= 0
- jquery-rails >= 0
- jquery-ui-rails >= 0
- json-schema >= 0
- jwt >= 0
- log4r >= 0
- mysql2 < 0.5
- net-sftp >= 0
- net-ssh >= 0
- pagy ~> 3.7
- pbkdf2-ruby >= 0
- puma >= 0
- rails ~> 5.0.6
- rbnacl >= 0
- rbnacl-libsodium >= 0
- sassc-rails >= 0
- sys-proctable ~> 1.2.0
- will_paginate >= 0
- zenodo_client >= 1.0.0
- actions/cache v1 composite
- actions/checkout v2 composite
- rtCamp/action-slack-notify v2 composite
- ruby/setup-ruby v1 composite
- mariadb/server * docker