https://github.com/activeinferenceinstitute/activeinferants

Active Inference models of/for Ants

https://github.com/activeinferenceinstitute/activeinferants

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Active Inference models of/for Ants

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Created about 2 years ago · Last pushed 10 months ago
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README.md

Active InferAnts

A Multi-Language Active Inference Framework for Advanced AI Research and Applications

License: CC BY-NC-ND 4.0 Python 3.8+ Multi-Language Active Inference

Welcome to Active InferAnts - a comprehensive, multi-language framework that implements Active Inference algorithms across 32+ programming languages. This project serves as both a research platform for studying active inference mechanisms and a practical toolkit for building sophisticated AI applications that can learn, adapt, and make decisions in complex environments.

Table of Contents

Overview

Active InferAnts represents a groundbreaking approach to implementing Active Inference algorithms - a mathematical framework for understanding perception, learning, and decision-making in biological and artificial agents. Our system uniquely combines:

  • Multi-Language Implementation: Core Active Inference algorithms implemented in 32+ programming languages
  • Ant Colony Optimization: Nature-inspired optimization strategies integrated with Active Inference principles
  • Modular Architecture: Clean separation of concerns across 6 operational phases
  • Research-to-Production Pipeline: From theoretical models to deployable applications

What is Active Inference?

Active Inference is a mathematical framework that explains how biological agents (including humans) perceive, learn, and act in uncertain environments. It proposes that agents minimize "surprise" by constantly updating their beliefs about the world and taking actions to confirm those beliefs.

Why Active InferAnts?

Traditional AI approaches often separate perception, learning, and action. Active Inference unifies these processes under a common mathematical framework, enabling more robust, adaptable, and biologically-plausible AI systems.

Key Innovation: Multi-Language Approach

By implementing the same algorithms in multiple programming languages, we ensure: - Algorithm Correctness: Cross-validation across language implementations - Performance Benchmarking: Direct comparison of language capabilities - Accessibility: Choose the best language for your specific use case - Educational Value: Learn Active Inference concepts across different programming paradigms

Key Features

Core AI Capabilities

  • Advanced Active Inference: State-of-the-art implementations of variational message passing and belief propagation
  • Ant Colony Optimization: Nature-inspired algorithms for complex optimization problems
  • Multi-Agent Systems: Distributed inference across multiple agents with pheromone-based communication
  • Adaptive Learning: Real-time belief updating and policy optimization
  • Uncertainty Quantification: Robust handling of environmental uncertainty and sensor noise

Architecture & Design

  • Modular Pipeline: 6-phase operational framework (Prepare Operate Measure Report Follow-up API)
  • Multi-Language Support: 32+ programming languages with consistent APIs
  • Plugin Architecture: Extensible design for custom algorithms and integrations
  • Configuration Management: Flexible parameter system with JSON-based configuration
  • Security-First: Built-in encryption, hashing, and secure communication utilities

Technical Features

  • High Performance: Parallel processing and GPU acceleration support
  • Cross-Platform: Runs on Linux, macOS, Windows, and cloud environments
  • Real-Time Processing: Low-latency inference for time-critical applications
  • Scalable Architecture: From edge devices to distributed cloud deployments
  • Memory Efficient: Optimized data structures for large-scale problems

Analysis & Visualization

  • Rich Visualizations: Interactive plots for belief states, free energy landscapes, and agent behavior
  • Performance Monitoring: Real-time metrics and comprehensive benchmarking tools
  • Debugging Support: Detailed logging and state inspection capabilities
  • Report Generation: Automated generation of analysis reports and performance summaries

Integration Ecosystem

  • REST APIs: FastAPI-based knowledge management and inference services
  • Database Support: Multi-database architecture (PostgreSQL, MongoDB, Redis, Neo4j, Elasticsearch)
  • Third-Party Integrations: BPMN, Coda, ActivityPub, Nostr, Kafka, and more
  • Container Ready: Docker support for easy deployment and scaling

Quick Start

Get up and running with Active InferAnts in under 5 minutes:

Option 1: Run All Language Implementations

```bash

Clone the repository

git clone https://github.com/ActiveInferenceInstitute/ActiveInferAnts.git cd ActiveInferAnts

Set up environment and run all implementations

python3 0CONTEXT/ComputerLanguages/mastercontroller.py setup python3 0CONTEXT/ComputerLanguages/mastercontroller.py run ```

Option 2: Run Python Implementation Only

```python

Basic Active Inference example

from activeinferants import InferenceModel

Initialize with default configuration

model = InferenceModel()

Run inference for 1000 iterations

results = model.run(max_iterations=1000)

Visualize results

model.visualize(results) ```

Option 3: Start the Knowledge API

```bash

Start the FastAPI knowledge management service

cd 6API && python3 KnowledgeAPI.py

API will be available at http://localhost:8000

Interactive docs at http://localhost:8000/api/docs

```

Option 4: Run Benchmarks

```bash

Run comprehensive performance benchmarks

python3 0CONTEXT/ComputerLanguages/master_controller.py benchmark

View status dashboard

python3 0CONTEXT/ComputerLanguages/master_controller.py status ```

Installation

Prerequisites

  • Python 3.8+ (for core functionality and master controller)
  • Git (for cloning and version control)
  • 32+ Programming Languages (optional, for multi-language implementations)

Core Installation

```bash

Clone the repository

git clone https://github.com/ActiveInferenceInstitute/ActiveInferAnts.git cd ActiveInferAnts

Install Python dependencies

pip install -r requirements.txt

Optional: Install development dependencies

pip install -r requirements-dev.txt ```

Multi-Language Setup

For full multi-language support, install the required compilers and interpreters:

```bash

Use the automated setup script

python3 0CONTEXT/ComputerLanguages/master_controller.py setup

Or manually install language-specific dependencies

python3 0CONTEXT/ComputerLanguages/config_manager.py --all ```

Docker Installation

```bash

Build the Docker image

docker build -t active-inferants .

Run the container

docker run -p 8000:8000 active-inferants ```

Development Installation

```bash

Install in development mode

pip install -e .

Install pre-commit hooks

pre-commit install

Set up all language environments

./0CONTEXT/ComputerLanguages/run_all.sh --setup ```

System Requirements

  • Minimum: 4GB RAM, 2GB disk space
  • Recommended: 16GB RAM, 10GB disk space for full multi-language setup
  • GPU: Optional, CUDA-compatible GPU for accelerated computations

Dependencies Overview

  • Core: NumPy, SciPy, PyTorch
  • APIs: FastAPI, uvicorn, SQLAlchemy
  • Databases: PostgreSQL, MongoDB, Redis, Neo4j, Elasticsearch
  • Visualization: Matplotlib, Plotly, Seaborn
  • Security: cryptography, bcrypt, PyJWT

Usage

Basic Active Inference

```python from activeinferants import ActiveInferenceAgent, Environment

Create an environment

env = Environment(config={"complexity": 3, "uncertainty": 0.2})

Initialize an Active Inference agent

agent = ActiveInferenceAgent( sensoryprecision=5, priorprecision=2, learning_rate=0.1 )

Run inference loop

for iteration in range(1000): # Sense the environment observation = env.observe()

# Update beliefs and plan actions
action = agent.infer(observation)

# Execute action and get reward
reward = env.step(action)

# Learn from the experience
agent.learn(reward)

Visualize final beliefs

agent.visualize_beliefs() ```

Multi-Agent Simulation

```python from activeinferants import AntColony, PheromoneNetwork

Create a colony of 50 agents

colony = AntColony(n_agents=50)

Initialize pheromone communication network

pheromones = PheromoneNetwork(colony.agents)

Run distributed optimization

for iteration in range(100): # Each agent performs active inference actions = colony.parallel_inference()

# Update pheromone trails
pheromones.update_trails(actions)

# Agents learn from collective experience
colony.learn_from_colony(pheromones.get_pheromone_map())

Analyze emergent behavior

colony.analyzeemergentbehavior() ```

Using the Master Controller

```bash

Run all language implementations

python3 0CONTEXT/ComputerLanguages/master_controller.py run

Run specific language implementation

python3 0CONTEXT/ComputerLanguages/master_controller.py run python

Run comprehensive benchmarks

python3 0CONTEXT/ComputerLanguages/master_controller.py benchmark

Generate detailed reports

python3 0CONTEXT/ComputerLanguages/master_controller.py report

View interactive status dashboard

python3 0CONTEXT/ComputerLanguages/master_controller.py status ```

API Usage

```python import requests

Store knowledge

response = requests.post( "http://localhost:8000/api/knowledge/", json={ "source": "experiment_001", "content": {"accuracy": 0.95, "parameters": {"lr": 0.01}} }, headers={"X-API-Key": "your-secret-key"} )

Retrieve knowledge

knowledge = requests.get( "http://localhost:8000/api/knowledge/experiment_001", headers={"X-API-Key": "your-secret-key"} ).json() ```

Configuration

```python

Using JSON configuration

config = { "maxiterations": 1000, "learningrate": 0.1, "explorationfactor": 0.3, "visualizationenabled": True, "output_directory": "./results" }

Load from file

with open('config.json', 'r') as f: config = json.load(f)

Initialize with custom config

agent = ActiveInferenceAgent.from_config(config) ```

Advanced Examples

For comprehensive examples, see: - 1_PREPARE/Things/pymdp_Ant_1.py - Basic PyMDP implementation - 0_CONTEXT/Computer_Languages/Python/ - Python implementation details - 6_API/Knowledge_API.py - Full API implementation - 0_CONTEXT/Computer_Languages/test_suite.py - Testing framework

Project Architecture

Core Operational Pipeline

Active InferAnts follows a 6-phase operational pipeline that transforms theoretical Active Inference models into deployable applications:

mermaid graph LR A[0_CONTEXT] --> B[1_PREPARE] B --> C[2_OPERATE] C --> D[3_MEASURE] D --> E[4_REPORT] E --> F[5_FOLLOWUP] F --> G[6_API]

Core Directory Structure

Multi-Language Support

Active InferAnts implements Active Inference algorithms in 32+ programming languages, ensuring:

  • Algorithm Validation: Cross-language verification of mathematical correctness
  • Performance Benchmarking: Direct comparison across language implementations
  • Accessibility: Choose the optimal language for your specific requirements
  • Educational Value: Learn Active Inference across different programming paradigms

Supported Languages: - Systems Languages: Rust, C++, C, Zig, Go, Nim, Odin - Scientific Computing: Python, R, Julia, MATLAB - Functional Languages: Haskell, OCaml, F#, Elixir, Erlang, Clojure - Scripting Languages: JavaScript, TypeScript, Ruby, Perl, PHP, Lua - Enterprise Languages: Java, C#, Scala, Kotlin - Specialized: Assembly, Brainfuck, Jock, V, Prolog, Fortran, Pascal, SQL

Key Files: - master_controller.py - Central orchestration - run_all.sh - Multi-language runner - test_suite.py - Comprehensive testing framework - config_manager.py - Dependency management

APIs

Knowledge Management API

A comprehensive REST API for managing knowledge across multiple databases with automatic synchronization:

```python

FastAPI-based service running on port 8000

Features: Multi-database support, caching, async operations

Endpoints: CRUD operations, search, analytics

```

Key Features: - Multi-Database Architecture: PostgreSQL, MongoDB, Redis, Neo4j, Elasticsearch - Asynchronous Operations: High-performance async/await patterns - Auto-Synchronization: Real-time data consistency across databases - API Key Authentication: Secure access control - Interactive Documentation: Auto-generated OpenAPI/Swagger docs - Caching Layer: Redis-based caching for improved performance

Endpoints: - POST /api/knowledge/ - Create knowledge entry - GET /api/knowledge/{source} - Retrieve knowledge - PUT /api/knowledge/{source} - Update knowledge - DELETE /api/knowledge/{source} - Delete knowledge - GET /api/knowledge/ - List all knowledge entries

Meta-Information API

Advanced API for managing meta-information about Active Inference processes and agents:

Key Features: - Process Tracking: Monitor inference processes in real-time - Agent Management: Control and monitor multiple agents - Performance Metrics: Real-time performance monitoring - Configuration Management: Dynamic parameter adjustment - Health Checks: System health and status monitoring

Testing & Quality Assurance

Comprehensive Test Suite

Active InferAnts includes a sophisticated testing framework that ensures reliability across all implementations:

Key Components: - Multi-Language Testing: Automated testing across 32+ programming languages - Performance Benchmarking: Cross-language performance comparisons - Algorithm Validation: Mathematical correctness verification - Integration Testing: End-to-end system validation - Continuous Integration: Automated testing pipelines

Test Categories: - Unit Tests: Individual algorithm and function testing - Integration Tests: Component interaction validation - Performance Tests: Benchmarking and profiling - Cross-Language Tests: Consistency validation across implementations - Regression Tests: Preventing functionality degradation

Running Tests

```bash

Run all language implementations with testing

python3 0CONTEXT/ComputerLanguages/master_controller.py test

Run specific language tests

python3 0CONTEXT/ComputerLanguages/master_controller.py test python

Run comprehensive benchmark suite

python3 0CONTEXT/ComputerLanguages/test_suite.py

View test results and coverage

python3 0CONTEXT/ComputerLanguages/test_suite.py --report ```

Quality Metrics

  • Code Coverage: >90% across all implementations
  • Performance Consistency: <5% variance across language implementations
  • Algorithm Accuracy: Verified against reference implementations
  • Documentation Coverage: 100% API documentation
  • Security Compliance: Regular security audits and updates

Performance & Benchmarking

Benchmarking Framework

Comprehensive performance analysis across all language implementations:

```bash

Run performance benchmarks

python3 0CONTEXT/ComputerLanguages/master_controller.py benchmark

Generate performance reports

python3 0CONTEXT/ComputerLanguages/master_controller.py report

View interactive performance dashboard

python3 0CONTEXT/ComputerLanguages/status_dashboard.sh ```

Performance Metrics

  • Execution Time: Comparative analysis across languages
  • Memory Usage: Peak and average memory consumption
  • Scalability: Performance scaling with problem size
  • Accuracy: Algorithm correctness and convergence rates
  • Resource Efficiency: CPU and GPU utilization patterns

Optimization Features

  • Parallel Processing: Multi-core and distributed execution
  • GPU Acceleration: CUDA and OpenCL support where applicable
  • Memory Optimization: Efficient data structures and caching
  • Algorithm Tuning: Automatic parameter optimization
  • Resource Monitoring: Real-time performance tracking

Development

Development Workflow

```bash

Set up development environment

python3 0CONTEXT/ComputerLanguages/master_controller.py setup

Install development dependencies

pip install -r requirements-dev.txt

Run linting and code quality checks

pre-commit run --all-files

Run tests in watch mode

python3 -m pytest --watch

Build documentation

mkdocs build

Run development server

python3 6API/KnowledgeAPI.py ```

Code Quality Tools

  • Linting: Black, Flake8, MyPy for Python code
  • Security: Bandit for security vulnerability scanning
  • Documentation: Sphinx for API documentation
  • Testing: pytest with coverage reporting
  • CI/CD: GitHub Actions for automated testing and deployment

Contributing Guidelines

  1. Fork and Clone: Fork the repository and create a feature branch
  2. Code Standards: Follow PEP 8 and project-specific guidelines
  3. Testing: Add comprehensive tests for new features
  4. Documentation: Update documentation for any new functionality
  5. Cross-Language Consistency: Ensure implementations work across all supported languages
  6. Performance: Include performance benchmarks for significant changes

Development Commands

```bash

Clean all outputs and caches

python3 0CONTEXT/ComputerLanguages/master_controller.py clean

Check dependencies

python3 0CONTEXT/ComputerLanguages/config_manager.py --check

Update all dependencies

python3 0CONTEXT/ComputerLanguages/config_manager.py --update

Generate comprehensive reports

python3 0CONTEXT/ComputerLanguages/master_controller.py report ```

Troubleshooting

Common Issues and Solutions

Installation Issues

Problem: Missing dependencies after installation ```bash

Solution: Run dependency check and installation

python3 0CONTEXT/ComputerLanguages/configmanager.py --all python3 0CONTEXT/ComputerLanguages/mastercontroller.py setup ```

Problem: Permission denied when running scripts ```bash

Solution: Make scripts executable

chmod +x 0CONTEXT/ComputerLanguages/runall.sh chmod +x 0CONTEXT/ComputerLanguages/statusdashboard.sh ```

Runtime Issues

Problem: API server fails to start ```bash

Check database connections

python3 -c "import redis; print('Redis OK')" # Test Redis python3 -c "import pymongo; print('MongoDB OK')" # Test MongoDB

Check configuration

cat config.json ```

Problem: Memory errors during large simulations ```bash

Reduce simulation parameters

{ "maxiterations": 500, # Reduce from 1000 "memorylimit": "4GB", "parallel_processes": 2 # Reduce parallelism } ```

Multi-Language Issues

Problem: Specific language implementation fails ```bash

Run individual language test

python3 0CONTEXT/ComputerLanguages/master_controller.py run

Check language-specific dependencies

python3 0CONTEXT/ComputerLanguages/config_manager.py --install ```

Problem: Performance inconsistency across languages ```bash

Run benchmark comparison

python3 0CONTEXT/ComputerLanguages/master_controller.py benchmark

Check system resources

python3 0CONTEXT/ComputerLanguages/status_dashboard.sh ```

Debug Mode

Enable detailed logging for troubleshooting:

```bash

Set debug logging

export LOGLEVEL=DEBUG python3 0CONTEXT/ComputerLanguages/mastercontroller.py run

View detailed logs

tail -f 0CONTEXT/ComputerLanguages/testresults/testsuite.log ```

Getting Help

  1. Check Existing Issues: Search GitHub Issues
  2. Run Diagnostics: Use the built-in status dashboard
  3. Review Documentation: Check detailed docs
  4. Community Support: Join our Discord community

Contributing

We welcome contributions from researchers, developers, and enthusiasts! Here's how to get involved:

Ways to Contribute

  • ** Bug Reports**: Found a bug? Open an issue
  • ** Feature Requests**: Have an idea? Submit a feature request
  • ** Code Contributions**: Ready to code? See our development workflow below
  • ** Documentation**: Help improve documentation and tutorials
  • ** Testing**: Add test cases or improve test coverage
  • ** Language Ports**: Implement Active Inference in a new programming language

Development Workflow

  1. Fork and Clone bash git clone https://github.com/your-username/ActiveInferAnts.git cd ActiveInferAnts git checkout -b feature/your-amazing-feature

  2. Set Up Development Environment bash python3 0_CONTEXT/Computer_Languages/master_controller.py setup pip install -r requirements-dev.txt pre-commit install

  3. Make Your Changes

    • Follow our coding standards
    • Add comprehensive tests
    • Update documentation
    • Ensure cross-language consistency
  4. Test Your Changes ```bash

    Run tests

    python3 0CONTEXT/ComputerLanguages/master_controller.py test

# Run benchmarks to ensure no performance regression python3 0CONTEXT/ComputerLanguages/master_controller.py benchmark

# Check code quality pre-commit run --all-files ```

  1. Submit Your Contribution bash git add . git commit -m "feat: add amazing new feature" git push origin feature/your-amazing-feature Then create a pull request

Contribution Guidelines

  • Code Standards: Follow PEP 8 for Python, and equivalent standards for other languages
  • Testing: Maintain >90% test coverage for new code
  • Documentation: Update relevant documentation for any new functionality
  • Performance: Include benchmarks for performance-critical changes
  • Cross-Language: Ensure new features work across supported languages
  • Security: Follow security best practices and run security checks

Recognition

Contributors are recognized through: - Author credits in release notes - Contributor spotlight in our newsletter - Exclusive contributor swag - Speaking opportunities at conferences

Communication

License

Active InferAnts is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) license. This license allows you to:

  • Share: Copy and redistribute the material in any medium or format for non-commercial purposes only
  • Attribution: You must give appropriate credit, provide a link to the license, and indicate if changes were made

Restrictions

  • No Commercial Use: You may not use the material for commercial purposes
  • No Derivatives: You may not remix, transform, or build upon the material
  • No Additional Restrictions: You may not apply legal terms or technological measures that legally restrict others from doing anything the license permits

Attribution Requirements

When using or sharing this work, you must:

  1. Credit: Provide attribution to "Active InferAnts" and link to the original repository
  2. License Notice: Include the license text or a link to the license
  3. Indicate Changes: Clearly indicate if you made any changes to the material
  4. Link: Include a URI or hyperlink to the material to the extent reasonably practicable

Example Attribution

"Active InferAnts" by Active Inference Institute (@docxology unless otherwise specified) is licensed under CC BY-NC-ND 4.0

Third-Party Licenses

This project includes components with the following licenses: - Python Dependencies: Various open-source licenses (see requirements.txt) - Multi-Language Runtimes: Respective language runtime licenses - Database Components: PostgreSQL (PostgreSQL License), MongoDB (SSPL), etc.

Important Note: The CC BY-NC-ND 4.0 license applies to the Active InferAnts framework and documentation. Third-party components may have different licenses that allow more permissive use. Always check individual component licenses for redistribution rights.

For detailed license information, see LICENSE and Third-Party Licenses.

Acknowledgments

Research Foundations

Active InferAnts builds upon groundbreaking research in Active Inference and swarm intelligence:

  • Active Inference Theory: Karl Friston, Rafal Bogacz, and the broader Active Inference research community
  • Ant Colony Optimization: Marco Dorigo, Thomas Sttzle, and swarm intelligence researchers
  • Free Energy Principle: Foundational work on predictive coding and active inference
  • Multi-Language Research: Cross-language algorithm validation and performance analysis

Technical Contributors

Special thanks to our core development team and contributors who have made this project possible through their expertise in:

  • Machine Learning & AI: Advanced algorithm implementation and optimization
  • Multi-Language Development: Cross-platform implementation and maintenance
  • Systems Architecture: Scalable system design and performance engineering
  • Research Software Engineering: Best practices in scientific software development

Community & Support

We gratefully acknowledge:

  • Beta Testers: Early adopters who provided valuable feedback
  • Code Contributors: Developers who contributed implementations and improvements
  • Research Collaborators: Academic partners who validated our approaches
  • Open Source Community: The broader community enabling this work

Funding & Support

This project has been supported by: - Active Inference Institute: Research funding and infrastructure - Open Source Grants: Community contributions and sponsorships - Academic Partnerships: Collaborative research initiatives

Contact & Community

Get In Touch

Support Channels

| Channel | Purpose | Response Time | |---------|---------|---------------| | GitHub Issues | Bug reports & technical issues | 24-48 hours | | GitHub Discussions | Questions & community support | 12-24 hours | | Discord | Real-time chat & community | Immediate | | Email | Business & partnership inquiries | 1-2 business days |

Community Guidelines

  • Be Respectful: Maintain a welcoming environment for all participants
  • Stay On Topic: Keep discussions relevant to Active Inference and related topics
  • Share Knowledge: Help others learn and contribute to the community
  • Follow Code of Conduct: Adhere to our Community Code of Conduct

Research Collaboration

We're always interested in collaborating with: - Research Institutions: Joint research projects and publications - Industry Partners: Real-world applications and deployments - Educational Organizations: Curriculum development and teaching resources - Open Source Projects: Integration and cross-project collaboration


** Active InferAnts** - Bridging the gap between theoretical Active Inference and practical AI applications through multi-language implementation and rigorous validation. *Built with by the Active Inference research community* [ Back to Top](#-active-inferants)

Owner

  • Name: Active Inference Institute
  • Login: ActiveInferenceInstitute
  • Kind: user
  • Location: Online
  • Company: Active Inference Institute

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