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sla

A DMS Shotgun Lipidomics Workflow Application to Facilitate High-Throughput, Comprehensive Lipidomics

https://github.com/syjgino/sla

Science Score: 57.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 3 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (9.9%) to scientific vocabulary

Keywords

lipidomics
Last synced: 10 months ago · JSON representation ·

Repository

A DMS Shotgun Lipidomics Workflow Application to Facilitate High-Throughput, Comprehensive Lipidomics

Basic Info
  • Host: GitHub
  • Owner: syjgino
  • License: apache-2.0
  • Default Branch: v1.3-keyV4
  • Homepage:
  • Size: 312 MB
Statistics
  • Stars: 4
  • Watchers: 3
  • Forks: 3
  • Open Issues: 0
  • Releases: 8
Topics
lipidomics
Created over 5 years ago · Last pushed about 1 year ago
Metadata Files
Readme License Citation

README.md

Apache-2.0 License

Shotgun Lipidomics Assistant

A python project to read and analysis Sciex Analyst output data
UCLA Lipidomics Core
View Demo | DataInspectGUI

A DMS Shotgun Lipidomics Workflow Application to Facilitate High-Throughput, Comprehensive Lipidomics
Baolong Su, Lisa F. Bettcher, Wei-Yuan Hsieh, Daniel Hornburg, Mackenzie J. Pearson, Niek Blomberg, Martin Giera, Michael P. Snyder, Daniel Raftery, Steven J. Bensinger, and Kevin J. Williams
Journal of the American Society for Mass Spectrometry Article ASAP
DOI: 10.1021/jasms.1c00203

Instruction

Please download the latest released package (version 1.3) and read the readme.docx
Note that the deployed executable file within the SLA may trigger some antivirus software. You can retore the file within your antivirus software if it is removed.

Version Updates

  • v1.3
    • Tune:
    • Add option to choose starting COV and ramp step size tune1
    • ReadMzml:
    • Add option to choose max number of 0s allowed among 20 scans
    • Add option to choose total number of scans
    • Add capability to process a 3rd method readmzml
    • Merge:
    • Add capability to process a 3rd method
    • Allow user to select sheet used as sample map merge

Owner

  • Name: Gino Su
  • Login: syjgino
  • Kind: user

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
  - family-names: Su
    given-names: Baolong
    orcid: https://orcid.org/0000-0002-1970-4417
title: "Shotgun Lipidomics Assistant"
version: 1.21
doi: 10.5281/zenodo.5508186
date-released: 2021-09-12

GitHub Events

Total
  • Delete event: 3
  • Push event: 3
Last Year
  • Delete event: 3
  • Push event: 3

Dependencies

src/LApack_V1_requirements.txt pypi
  • matplotlib ==3.1.2
  • numpy ==1.22.3
  • pandas ==0.25.3
  • pyopenms ==2.4.0
  • scipy ==1.4.0
  • seaborn ==0.9.0
  • ttkthemes ==3.0.0