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https://github.com/adamrtalbot/nextflow

A DSL for data-driven computational pipelines

https://github.com/adamrtalbot/nextflow

Science Score: 41.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: nature.com, acm.org
  • ○
    Academic email domains
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    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (14.3%) to scientific vocabulary
Last synced: 10 months ago · JSON representation ·

Repository

A DSL for data-driven computational pipelines

Basic Info
  • Host: GitHub
  • Owner: adamrtalbot
  • License: apache-2.0
  • Language: Groovy
  • Default Branch: master
  • Homepage: http://nextflow.io
  • Size: 54.2 MB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Fork of nextflow-io/nextflow
Created about 3 years ago · Last pushed 12 months ago
Metadata Files
Readme Changelog Contributing License Code of conduct Citation

README.md

Nextflow Logo

"Dataflow variables are spectacularly expressive in concurrent programming"
Henri E. Bal , Jennifer G. Steiner , Andrew S. Tanenbaum

Nextflow CI Nextflow version Nextflow Twitter Nextflow Publication install with bioconda Nextflow license

Nextflow is a workflow system for creating scalable, portable, and reproducible workflows. It is based on the dataflow programming model, which greatly simplifies the writing of parallel and distributed pipelines, allowing you to focus on the flow of data and computation. Nextflow can deploy workflows on a variety of execution platforms, including your local machine, HPC schedulers, AWS Batch, Azure Batch, Google Cloud Batch, and Kubernetes. Additionally, it supports many ways to manage your software dependencies, including Conda, Spack, Docker, Podman, Singularity, and more.

Quick start

Install Nextflow with a single command:

bash curl -fsSL https://get.nextflow.io | bash

It creates the nextflow executable file in the current directory. You can then move it to a directory in your $PATH to run it from anywhere.

Nextflow can also be installed from Bioconda:

bash conda install -c bioconda nextflow

Documentation

The Nextflow documentation is available for the latest stable and edge releases.

Community

You can post questions and get help in the Nextflow community forum or the Nextflow Slack. Bugs and feature requests should be reported as GitHub issues.

The Nextflow community is highly active with regular community meetings, events, a podcast and more. You can view much of this material on the Nextflow and nf-core YouTube channels.

The nf-core project is a community effort aggregating high quality Nextflow workflows which can be used by everyone.

Contributing

Contributions are more than welcome. See the CONTRIBUTING file for details.

License

Nextflow is released under the Apache 2.0 license. Nextflow is a registered trademark.

Citations

If you use Nextflow in your work, please cite:

P. Di Tommaso, et al. Nextflow enables reproducible computational workflows. Nature Biotechnology 35, 316–319 (2017) doi:10.1038/nbt.3820

Credits

Nextflow is built on two *great* open-source software projects, Groovy and GPars.

YourKit is kindly supporting Nextflow with its fully-featured Java Profiler.

Owner

  • Name: Adam Talbot
  • Login: adamrtalbot
  • Kind: user
  • Location: Warwick, UK
  • Company: @seqeralabs

Bioinformatics Engineer at @seqeralabs

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
  - family-names: "Di Tommaso"
    given-names: "Paolo"
    orcid: "https://orcid.org/0000-0003-3220-0253"
  - family-names: "Chatzou"
    given-names: "Maria"
  - family-names: "Floden"
    given-names: "Evan"
    orcid: "https://orcid.org/0000-0002-5431-190X"
  - family-names: "Prieto Barja"
    given-names: "Pablo"
  - family-names: "Palumbo"
    given-names: "Emilio"
    orcid: "https://orcid.org/0000-0003-4599-8161"
  - family-names: "Notredame"
    given-names: "Cedric"
    orcid: "https://orcid.org/0000-0003-1461-0988"
title: "Nextflow enables reproducible computational workflows"
version: 1.0.0
doi: 10.1038/nbt.3820
date-released: 2017-04-11
url: "https://nextflow.io"

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