MiscMetabar - v 0.14.0

Scientific Software - Peer-reviewed - R
Published by adrientaudiere 10 months ago

MiscMetabar - v 0.13.0

Scientific Software - Peer-reviewed - R
Published by adrientaudiere 11 months ago

MiscMetabar - v 0.12.0

• Add function [assignidtaxa()] and [learnidtaxa()] to facilitate the taxonomic assignation using the idtaxa algorithm from the DECIPHER R package.
• Add option idtaxa to method in [addnewtaxonomy_pq()]
• Add function [tblsumtaxtable()] to summarize tax_table from a phyloseq object
• In function [assignsintax()], add params `toofew(default value "align_start") andtoo_many` (default "merge") to authorize db with variable numbers of rank and parenthesis in taxonomic name,

Scientific Software - Peer-reviewed - R
Published by adrientaudiere 12 months ago

MiscMetabar - v 0.11.0

• Add function filt_taxa_pq() to filter taxa based on the number of sequences/occurences
• Add functions no_legend() and hill_curves_pq() to plot hill diversity accumulation curves for phyloseq
• Add function umap_pq() to compute Dimensionality Reduction with UMAP
• Add function plot_complexity_pq() to plot kmer complexity of references sequences of a phyloseq object
• Add param type to ridge_pq() to plot a cumulative version (type="ecdf") version of ridge
• Introduce the idea of a pq-verse: some other packages will complete the MiscMetabar packages to make package maintenance easier. The comparpq package will facilitate the comparison of phyloseq object with different taxonomy, different clustering methods, different samples with same modality or different primers.
• Add functions [assignvsearchlca()], [assignsintax()] and internal function [writetemp_fasta()]
• Add param method to add_new_taxonomy_pq() to allow the use of dada2::assign_taxonomy(), [assignsintax()] or [assignvsearch_lca()]

Scientific Software - Peer-reviewed - R
Published by adrientaudiere about 1 year ago

MiscMetabar - v 0.10.4

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Published by adrientaudiere about 1 year ago

MiscMetabar - v 0.10.3

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Published by adrientaudiere about 1 year ago

MiscMetabar - v 0.10.1

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Published by adrientaudiere about 1 year ago

MiscMetabar - v 0.9.3

Scientific Software - Peer-reviewed - R
Published by adrientaudiere over 1 year ago

MiscMetabar - v 0.9.2

Scientific Software - Peer-reviewed - R
Published by adrientaudiere over 1 year ago

MiscMetabar - V0.9.1

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Published by adrientaudiere over 1 year ago

MiscMetabar - v.0.8.00

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Published by adrientaudiere over 1 year ago

MiscMetabar - v0.7.12

Scientific Software - Peer-reviewed - R
Published by adrientaudiere over 1 year ago

MiscMetabar - v0.7.10

What's Changed

• Second release on CRAN by @adrientaudiere in https://github.com/adrientaudiere/MiscMetabar/pull/87

Full Changelog: https://github.com/adrientaudiere/MiscMetabar/compare/v0.7.8...v0.7.10

Scientific Software - Peer-reviewed - R
Published by adrientaudiere almost 2 years ago

MiscMetabar - v0.7.8

What's Changed

• v0.7.8 by @adrientaudiere in https://github.com/adrientaudiere/MiscMetabar/pull/86

Full Changelog: https://github.com/adrientaudiere/MiscMetabar/compare/v0.7.7...v0.7.8

Scientific Software - Peer-reviewed - R
Published by adrientaudiere almost 2 years ago

MiscMetabar - v0.7.7

What's Changed

• merge dev by @adrientaudiere in https://github.com/adrientaudiere/MiscMetabar/pull/82
• v.0.7.5-alpha by @adrientaudiere in https://github.com/adrientaudiere/MiscMetabar/pull/83
• v0.7.5-beta by @adrientaudiere in https://github.com/adrientaudiere/MiscMetabar/pull/84
• V0.7.7 getting closer to CRAN by @adrientaudiere in https://github.com/adrientaudiere/MiscMetabar/pull/85

Full Changelog: https://github.com/adrientaudiere/MiscMetabar/compare/v0.7.5...v0.7.7

Scientific Software - Peer-reviewed - R
Published by adrientaudiere almost 2 years ago

MiscMetabar - v0.7.5-beta2

What's Changed

• v0.7.5-beta by @adrientaudiere in https://github.com/adrientaudiere/MiscMetabar/pull/84

Full Changelog: https://github.com/adrientaudiere/MiscMetabar/compare/v.0.7.5-alpha...v0.7.5-beta2

Scientific Software - Peer-reviewed - R
Published by adrientaudiere almost 2 years ago

MiscMetabar - v0.7.5-beta

What's Changed

• Improve test and examples for CRAN submission - mainly for windows build by @adrientaudiere in https://github.com/adrientaudiere/MiscMetabar/pull/81
• merge dev by @adrientaudiere in https://github.com/adrientaudiere/MiscMetabar/pull/82
• v.0.7.5-alpha by @adrientaudiere in https://github.com/adrientaudiere/MiscMetabar/pull/83

Full Changelog: https://github.com/adrientaudiere/MiscMetabar/compare/v0.7.4...v0.7.5-beta

Scientific Software - Peer-reviewed - R
Published by adrientaudiere almost 2 years ago

MiscMetabar - v.0.7.5-alpha

What's Changed

• Improve test and examples for CRAN submission - mainly for windows build by @adrientaudiere in https://github.com/adrientaudiere/MiscMetabar/pull/81

Full Changelog: https://github.com/adrientaudiere/MiscMetabar/compare/v0.7.4...v0.7.5

What's Changed

• merge dev by @adrientaudiere in https://github.com/adrientaudiere/MiscMetabar/pull/82
• v.0.7.5-alpha by @adrientaudiere in https://github.com/adrientaudiere/MiscMetabar/pull/83

Full Changelog: https://github.com/adrientaudiere/MiscMetabar/compare/v0.7.5...v.0.7.5-alpha

Scientific Software - Peer-reviewed - R
Published by adrientaudiere almost 2 years ago

MiscMetabar - v0.7.4

What's Changed

• Improve test and examples for CRAN submission by @adrientaudiere in https://github.com/adrientaudiere/MiscMetabar/pull/80

Full Changelog: https://github.com/adrientaudiere/MiscMetabar/compare/v0.7.3...v0.7.4

Scientific Software - Peer-reviewed - R
Published by adrientaudiere almost 2 years ago

MiscMetabar - v0.7.3

What's Changed

• rebuild documentation by @adrientaudiere in https://github.com/adrientaudiere/MiscMetabar/pull/78
• v0.7.3 for submission to CRAN by @adrientaudiere in https://github.com/adrientaudiere/MiscMetabar/pull/79

Full Changelog: https://github.com/adrientaudiere/MiscMetabar/compare/v0.7.2...v0.7.3

Scientific Software - Peer-reviewed - R
Published by adrientaudiere almost 2 years ago

MiscMetabar - v0.7.2-alpha

What's Changed

• rebuild documentation by @adrientaudiere in https://github.com/adrientaudiere/MiscMetabar/pull/78

Full Changelog: https://github.com/adrientaudiere/MiscMetabar/compare/v0.7.2...v0.7.2-alpha

Scientific Software - Peer-reviewed - R
Published by adrientaudiere almost 2 years ago

MiscMetabar - v0.7.2

What's Changed

• Improve test coverage by @adrientaudiere in https://github.com/adrientaudiere/MiscMetabar/pull/77

Full Changelog: https://github.com/adrientaudiere/MiscMetabar/compare/v0.7.1...v0.7.2

Scientific Software - Peer-reviewed - R
Published by adrientaudiere almost 2 years ago

MiscMetabar - v0.7.1

What's Changed

• Pave the way for cran Submission by @adrientaudiere in https://github.com/adrientaudiere/MiscMetabar/pull/76

Full Changelog: https://github.com/adrientaudiere/MiscMetabar/compare/v0.7.0...v0.7.1

Scientific Software - Peer-reviewed - R
Published by adrientaudiere almost 2 years ago

MiscMetabar - v0.7.0

What's Changed

• Merging dev by @adrientaudiere in https://github.com/adrientaudiere/MiscMetabar/pull/73
• Merge pull request #73 from adrientaudiere/master by @adrientaudiere in https://github.com/adrientaudiere/MiscMetabar/pull/74
• V0.7 add chimera detection and removal + harmonize parameter names + swarm clustering by @adrientaudiere in https://github.com/adrientaudiere/MiscMetabar/pull/75

Full Changelog: https://github.com/adrientaudiere/MiscMetabar/compare/v0.6.1...v0.7.0

Scientific Software - Peer-reviewed - R
Published by adrientaudiere almost 2 years ago

MiscMetabar - v0.6.1

v0.6.1

Scientific Software - Peer-reviewed - R
Published by adrientaudiere almost 2 years ago

MiscMetabar - Version 0.6.0

Version 0.6.0

Scientific Software - Peer-reviewed - R
Published by adrientaudiere almost 2 years ago

MiscMetabar - Version 0.52

Version for submission to JOSS

Scientific Software - Peer-reviewed - R
Published by adrientaudiere about 2 years ago

MiscMetabar - V 0.41

Scientific Software - Peer-reviewed - R
Published by adrientaudiere about 2 years ago

MiscMetabar - 0.3

Version 0.3

Scientific Software - Peer-reviewed - R
Published by adrientaudiere almost 3 years ago

MiscMetabar - v0.23

Scientific Software - Peer-reviewed - R
Published by adrientaudiere almost 3 years ago