https://github.com/adamtaranto/ltr-harvest-reformat
Correct sequence names in LTR_Harvest GFF3 output.
Science Score: 13.0%
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○CITATION.cff file
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✓codemeta.json file
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○.zenodo.json file
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○Scientific vocabulary similarity
Low similarity (5.4%) to scientific vocabulary
Repository
Correct sequence names in LTR_Harvest GFF3 output.
Basic Info
- Host: GitHub
- Owner: Adamtaranto
- License: mit
- Language: Python
- Default Branch: master
- Size: 2.93 KB
Statistics
- Stars: 2
- Watchers: 2
- Forks: 0
- Open Issues: 1
- Releases: 0
Metadata Files
README.md
LTR-Harvest-Reformat
Correct sequence names in LTR_Harvest GFF3 output.
Contents
Options and usage
Installing LTR-HR
Clone from this repository:
bash
git clone https://github.com/Adamtaranto/LTR-Harvest-Reformat.git && cd LTR-Harvest-Reformat
Example usage
bash
./LTR-Harvest-Reformat.py -i LTR_Harvest_annot.gff3 -d results -o renammed_LTR_Harvest_annot.gff3
Output: - results/renammedLTRHarvest_annot.gff3
Standard options
``` Usage: ./LTR-Harvest-Reformat.py [-h] [--version] -i INFILE [-d OUTDIR] [-o GFFOUT]
Correct sequence names in LTR_Harvest GFF3 output.
optional arguments: -h, --help Show this help message and exit. --version Show program's version number and exit. -i, --infile GFF3 file from LTR_Harvest. -d, --outDir Optional: Set output directory. -o, --gffOut Optional: Set alternative name for output file. ```
License
Software provided under MIT license.
Owner
- Name: Adam Taranto
- Login: Adamtaranto
- Kind: user
- Location: Melbourne, Australia
- Company: The University of Melbourne
- Repositories: 38
- Profile: https://github.com/Adamtaranto
GitHub Events
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Last Year
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Last synced: 10 months ago
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- Total pull requests: 0
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- Total issue authors: 1
- Total pull request authors: 0
- Average comments per issue: 0.0
- Average comments per pull request: 0
- Merged pull requests: 0
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- Bot pull requests: 0
Past Year
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- Pull requests: 0
- Average time to close issues: N/A
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- Average comments per issue: 0
- Average comments per pull request: 0
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- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- Adamtaranto (1)