Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/adaptivemotorcontrollab/modelzoo-figures

SuperAnimal models supporting data

https://github.com/adaptivemotorcontrollab/modelzoo-figures

Science Score: 33.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ✓
    Committers with academic emails
    3 of 6 committers (50.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (7.8%) to scientific vocabulary

Keywords from Contributors

deeplabcut optogenetics pose-estimation tracking-algorithm amadeusgpt cebra llms segment-anything
Last synced: 10 months ago · JSON representation

Repository

SuperAnimal models supporting data

Basic Info
  • Host: GitHub
  • Owner: AdaptiveMotorControlLab
  • License: gpl-3.0
  • Language: Jupyter Notebook
  • Default Branch: main
  • Homepage: http://www.deeplabcut.org
  • Size: 312 MB
Statistics
  • Stars: 15
  • Watchers: 2
  • Forks: 2
  • Open Issues: 0
  • Releases: 0
Created over 3 years ago · Last pushed over 1 year ago
Metadata Files
Readme License

README.md

SuperAnimal pretrained pose estimation models for behavioral analysis

dlczoo

Part of the DeepLabCut Model Zoo Project

Figures and Data

Figures and data supporting Ye et al. 2023 (under revision).

Dependencies

bash pip install -r requirements.txt

Repo organization

  • data: Folder to data files
  • figures: Rendered paper figures in ipynb format.

Citation

@article{ye2023superanimal, title={SuperAnimal pretrained pose estimation models for behavioral analysis}, author={Shaokai Ye and Anastasiia Filippova and Jessy Lauer and Steffen Schneider and Maxime Vidal and Tian Qiu and Alexander Mathis and Mackenzie Weygandt Mathis}, year={2023}, eprint={2203.07436}, archivePrefix={arXiv}, primaryClass={cs.CV} }

Keypoint model diagrams

As part of SuperAnimal, we released two major classes of pose models, TopViewMouse and Quadruped. Here are their keypoint guides:

Owner

  • Name: Mathis Lab | Adaptive Motor Control
  • Login: AdaptiveMotorControlLab
  • Kind: organization
  • Email: mackenzie@post.harvard.edu
  • Location: Swiss Federal Institute of Technology

Mechanisms underlying adaptive behavior in intelligent systems

GitHub Events

Total
  • Watch event: 6
  • Push event: 1
  • Pull request event: 1
Last Year
  • Watch event: 6
  • Push event: 1
  • Pull request event: 1

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 119
  • Total Committers: 6
  • Avg Commits per committer: 19.833
  • Development Distribution Score (DDS): 0.462
Past Year
  • Commits: 1
  • Committers: 1
  • Avg Commits per committer: 1.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Mackenzie Mathis m****s@r****u 64
Jessy Lauer 3****u 26
shaokaiye s****h@g****m 25
nastya236 f****v@p****u 2
Steffen Schneider s****n@b****g 1
MacKenzie Mathis m****e@1****u 1
Committer Domains (Top 20 + Academic)
169-231-119-236.wireless.ucsb.edu: 1 bethgelab.org: 1 phystech.edu: 1 rowland.harvard.edu: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 0
  • Total pull requests: 31
  • Average time to close issues: N/A
  • Average time to close pull requests: 23 days
  • Total issue authors: 0
  • Total pull request authors: 3
  • Average comments per issue: 0
  • Average comments per pull request: 0.26
  • Merged pull requests: 28
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • MMathisLab (11)
  • yeshaokai (11)
  • jeylau (5)
Top Labels
Issue Labels
Pull Request Labels

Dependencies

.github/workflows/figures.yml actions
  • actions/cache v3 composite
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
requirements.txt pypi
  • black *
  • h5py *
  • jupyter *
  • jupytext *
  • matplotlib *
  • nbconvert *
  • numpy *
  • pandas *
  • persim *
  • seaborn *
  • tables *