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Recent Releases of dcm2bids

dcm2bids - 3.2.0

Dear dcm2bids Community,

We are excited to announce the release of dcm2bids version 3.2.0 🎉 🥳 It comes with a couple of new features such as:

  • Our new container allows you to enjoy the full dcm2bids experience with defacing and bids validation more easily.
  • dcm2bids is now compatible with BIDS 1.9.0
  • Updated documentation

Thank you Arnaud and Sam

We would like to thank @smeisler and the users from neurostars for their feedback.

What's Changed

  • Bump urllib3 from 2.0.6 to 2.0.7 by @dependabot in https://github.com/UNFmontreal/Dcm2Bids/pull/281
  • Fixed Nick's name by @jcohenadad in https://github.com/UNFmontreal/Dcm2Bids/pull/285
  • Fetch all descriptions: id list by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/283
  • Bump jinja2 from 3.1.2 to 3.1.3 by @dependabot in https://github.com/UNFmontreal/Dcm2Bids/pull/287
  • Bump gitpython from 3.1.37 to 3.1.41 by @dependabot in https://github.com/UNFmontreal/Dcm2Bids/pull/286
  • Bump idna from 3.4 to 3.7 by @dependabot in https://github.com/UNFmontreal/Dcm2Bids/pull/291
  • [BF] Replace macos-latest with macos-13 by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/299
  • Bump requests from 2.31.0 to 2.32.0 by @dependabot in https://github.com/UNFmontreal/Dcm2Bids/pull/297
  • Bump jinja2 from 3.1.3 to 3.1.4 by @dependabot in https://github.com/UNFmontreal/Dcm2Bids/pull/296
  • Changed 'there' to 'their' by @joey-scanga in https://github.com/UNFmontreal/Dcm2Bids/pull/292
  • Bump urllib3 from 2.0.7 to 2.2.2 by @dependabot in https://github.com/UNFmontreal/Dcm2Bids/pull/302
  • Update to BIDS 1.9 by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/301
  • Bump certifi from 2023.7.22 to 2024.7.4 by @dependabot in https://github.com/UNFmontreal/Dcm2Bids/pull/305
  • [ENH] Allow disable automatic reorder entities by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/303
  • Update dev to match master' state by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/306
  • [ENH] Allow user to use relative path for bids uri by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/304
  • Update GHA to use setup-python@v5 instead of v1 by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/309
  • [BF] Fix output log and output folder with dcm2bids_helper by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/312
  • [BF] Fix check folder by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/313
  • Document new features + docker by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/311
  • Update master to 3.2.0 by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/314

New Contributors

  • @jcohenadad made their first contribution in https://github.com/UNFmontreal/Dcm2Bids/pull/285
  • @joey-scanga made their first contribution in https://github.com/UNFmontreal/Dcm2Bids/pull/292

Full Changelog: https://github.com/UNFmontreal/Dcm2Bids/compare/3.1.1...3.2.0

- Python
Published by arnaudbore over 1 year ago

dcm2bids - 3.1.1

Here is the newest release of dcm2bids ! 🎉 🥳

No new feature but two useful fixes ! Hope you like this new feature less buggy :no_entry: :bug:

Arnaud and Sam

What's Changed

  • Bump gitpython from 3.1.35 to 3.1.37 by @dependabot in https://github.com/UNFmontreal/Dcm2Bids/pull/277
  • [BF] Auto extractors and merge regex expressions by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/275
  • [ENH] fix binary by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/278

Full Changelog: https://github.com/UNFmontreal/Dcm2Bids/compare/3.1.0...3.1.1

- Python
Published by arnaudbore over 2 years ago

dcm2bids - 3.1.0

We are excited to announce the newest release of dcm2bids ! :tada: :partying_face:

This update introduces some new features, improvements, and bug fixes to enhance your DICOM to BIDS conversion experience. Everything embedded into this version comes from the community :heart:. Here are few examples.

  • During OHBM we've been asked to support archives as a dicom input, it's part of Dcm2bids 3.1.0. Check dcm2bids --help output. link
  • While helping people on Neurostars, @smeisler indicates that he needed to run pydeface after dcm2bids conversion since he needed both versions before and after defacing, it's now part of Dcm2bids 3.1.0. Check custom_entities in post-op section. link
  • If you want to speed up dcm2bids conversion @SamGuay wrote a really nice tutorial to convert your data faster than ever.

Your questions and concerns remain our top priority and continue to shape the future of Dcm2bids!

Thank you Arnaud and Sam

We would like to thank @smeisler, @Remi-Gau, @raniaezzo, @arokem and the users from neurostars for their feedbacks.

What's Changed

  • [MAINT] validate citation.cff by @Remi-Gau in https://github.com/UNFmontreal/Dcm2Bids/pull/257
  • Bump gitpython from 3.1.32 to 3.1.34 by @dependabot in https://github.com/UNFmontreal/Dcm2Bids/pull/259
  • Bump gitpython from 3.1.34 to 3.1.35 by @dependabot in https://github.com/UNFmontreal/Dcm2Bids/pull/261
  • Fix typos in scaffold files by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/263
  • [ENH] Add possibility to input dicom tar or zip archives by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/262
  • Fix post op - pydeface by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/260
  • Fix release tags in GHA by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/266
  • Release 3.0.3 by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/265
  • [ENH] - Automate help message in doc by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/267
  • [DOC] - Tutorial on parallel x dcm2bids by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/268

Full Changelog: https://github.com/UNFmontreal/Dcm2Bids/compare/3.0.2...3.1.0

- Python
Published by arnaudbore over 2 years ago

dcm2bids - 3.0.2

First of all thank you to everybody who came see our poster during OHBM 2023 in Montreal !

We listened to you and we added an option to reorganize your NIFTIs into a BIDS structure. Check this link. We also extended the possibilities provided by the item sidecar_changes.

Congrats :partying_face:

What's Changed

  • codespell: add config and action to codespell the code to avoid known typos by @yarikoptic in https://github.com/UNFmontreal/Dcm2Bids/pull/245
  • Bump certifi from 2023.5.7 to 2023.7.22 by @dependabot in https://github.com/UNFmontreal/Dcm2Bids/pull/247
  • Bring all 3 Arnauds into 1 by @yarikoptic in https://github.com/UNFmontreal/Dcm2Bids/pull/246
  • Add option to skip_dcm2niix and reorganize NIFTI and JSON files by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/248
  • Allowing Numericals in JSON custom fields by @smeisler in https://github.com/UNFmontreal/Dcm2Bids/pull/250
  • Bump gitpython from 3.1.31 to 3.1.32 by @dependabot in https://github.com/UNFmontreal/Dcm2Bids/pull/251

New Contributors

  • @yarikoptic made their first contribution in https://github.com/UNFmontreal/Dcm2Bids/pull/245
  • @dependabot made their first contribution in https://github.com/UNFmontreal/Dcm2Bids/pull/247

Full Changelog: https://github.com/UNFmontreal/Dcm2Bids/compare/3.0.1...3.0.2

- Python
Published by arnaudbore over 2 years ago

dcm2bids - 3.0.1

We could not be more proud of the 3.0.1 dcm2bids release :blush: . We put everything we've learned from our past experiences and listen to all our users' ideas into this version.

Advanced searching criterias such as extractors combined with custom entities, the ability to compare floats or the autoextractentities option directly accessible from dcm2bids command will make the conversion to BIDS smoother than ever and significantly reduce the complexity and the length of your configuration file especially for multi-site acquisitions.

We highly encourage you to dive into the documentation since we added quite a lot of new features.

Please don't hesitate to give us your feedback using this https://github.com/UNFmontreal/Dcm2Bids/discussions/240.

Thank you again for all our users who contributed in some ways to this release. Thank you @SamGuay for the long discussions and late debug sessions. :tada:

Arnaud

What's Changed

  • [DOC] fix typo and add detail about entity reordering by @Remi-Gau in https://github.com/UNFmontreal/Dcm2Bids/pull/183
  • update version to match release by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/185
  • [ENH] Refactorisation - Major API upgrade by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/200
  • Get README from bids toolkit by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/201
  • Add bids-validator option by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/206
  • Upgrade feature Intended for by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/207
  • [ENH] Upgrade custom entities by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/208
  • [FIX] Broken scaffold no more by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/209
  • [FIX,ENH] - Improve dcm2bids_helper mod by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/210
  • Generalization of sidecarchanges using ids by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/213
  • [ENH] dataType -> datatype and modalityLabel -> suffix by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/214
  • Fix log n version by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/219
  • [BF] valid participant by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/215
  • Allow a criteria item to be a dict with a key - any (or) or all (and) by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/217
  • Add an option to use duplicates instead of runs as suggested in heudiconv project. by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/218
  • [BF] Valid session by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/222
  • add test helper by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/220
  • [BF] dcm2bids_scaffold by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/224
  • prevent doc deployment by pushing to master by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/226
  • [ENH] Add major OS executables on new release by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/221
  • [ENH] Generalization of defaceTpl to post_op by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/225
  • [ENH] Rename all cap var by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/227
  • Revert doc to 2.1.9 by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/228
  • Automated version-control documentation for 2.1.9 and up by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/231
  • Fix GHA for docs + layouts by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/234
  • [ENH] Add float comparison by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/229
  • [Quick Fix] Add specific message when no acquisition was found by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/235
  • Fix typo srcfile dstfile by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/236
  • Improve doc for v3.0.0 by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/223
  • [FIX] - update the alias for dev and latest by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/237
  • Quick fix version by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/238
  • Update docs by @smeisler in https://github.com/UNFmontreal/Dcm2Bids/pull/239
  • [BF] fix sidecars suggested by Sam by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/243

New Contributors

  • @Remi-Gau made their first contribution in https://github.com/UNFmontreal/Dcm2Bids/pull/183
  • @smeisler made their first contribution in https://github.com/UNFmontreal/Dcm2Bids/pull/239

Full Changelog: https://github.com/UNFmontreal/Dcm2Bids/compare/2.1.9...3.0.1

- Python
Published by arnaudbore over 2 years ago

dcm2bids - 3.0.0

We could not be more proud of the 3.0.0 dcm2bids release blush . We put everything we've learned from our past experiences and listen to all our users' ideas into this version.

Advanced searching criterias such as extractors combined with custom entities, the ability to compare floats or the autoextractentities option directly accessible from dcm2bids command will make the conversion to BIDS smoother than ever and significantly reduce the complexity and the length of your configuration file especially for multi-site acquisitions.

We highly encourage you to dive into the documentation since we added quite a lot of new features.

Please don't hesitate to give us your feedback using this https://github.com/UNFmontreal/Dcm2Bids/discussions/240.

Thank you again for all our users who contributed in some ways to this release. Thank you @SamGuay for the long discussions and late debug sessions. tada

Arnaud

What's Changed

  • [DOC] fix typo and add detail about entity reordering by @Remi-Gau in https://github.com/UNFmontreal/Dcm2Bids/pull/183
  • update version to match release by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/185
  • [ENH] Refactorisation - Major API upgrade by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/200
  • Get README from bids toolkit by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/201
  • Add bids-validator option by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/206
  • Upgrade feature Intended for by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/207
  • [ENH] Upgrade custom entities by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/208
  • [FIX] Broken scaffold no more by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/209
  • [FIX,ENH] - Improve dcm2bids_helper mod by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/210
  • Generalization of sidecarchanges using ids by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/213
  • [ENH] dataType -> datatype and modalityLabel -> suffix by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/214
  • Fix log n version by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/219
  • [BF] valid participant by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/215
  • Allow a criteria item to be a dict with a key - any (or) or all (and) by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/217
  • Add an option to use duplicates instead of runs as suggested in heudiconv project. by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/218
  • [BF] Valid session by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/222
  • add test helper by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/220
  • [BF] dcm2bids_scaffold by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/224
  • prevent doc deployment by pushing to master by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/226
  • [ENH] Add major OS executables on new release by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/221
  • [ENH] Generalization of defaceTpl to post_op by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/225
  • [ENH] Rename all cap var by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/227
  • Revert doc to 2.1.9 by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/228
  • Automated version-control documentation for 2.1.9 and up by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/231
  • Fix GHA for docs + layouts by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/234
  • [ENH] Add float comparison by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/229
  • [Quick Fix] Add specific message when no acquisition was found by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/235
  • Fix typo srcfile dstfile by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/236
  • Improve doc for v3.0.0 by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/223
  • [FIX] - update the alias for dev and latest by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/237
  • Quick fix version by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/238
  • Update docs by @smeisler in https://github.com/UNFmontreal/Dcm2Bids/pull/239
  • [BF] fix sidecars suggested by Sam by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/243

New Contributors

  • @Remi-Gau made their first contribution in https://github.com/UNFmontreal/Dcm2Bids/pull/183
  • @smeisler made their first contribution in https://github.com/UNFmontreal/Dcm2Bids/pull/239

Full Changelog: https://github.com/UNFmontreal/Dcm2Bids/compare/2.1.9...3.0.0

- Python
Published by arnaudbore over 2 years ago

dcm2bids - 3.0.0rc1

Ok let's be clear after working very hard on this we are definitively biased so we decided to ask ChatGPT to write for us a short fun description for our brand new version.

Introducing the latest version of dcm2bids: the superhero of medical imaging data conversion! With simplified configuration, enhanced DICOM handling, comprehensive data validation, advanced options, and amazing new features, dcm2bids will transform your data into BIDS format like magic. Join the fun and unleash your scientific superpowers today!

Please check the documentation :tada:

:warning: This is a release candidate.

What's Changed

  • [DOC] fix typo and add detail about entity reordering by @Remi-Gau in https://github.com/UNFmontreal/Dcm2Bids/pull/183
  • update version to match release by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/185
  • [ENH] Refactorisation - Major API upgrade by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/200
  • Get README from bids toolkit by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/201
  • Add bids-validator option by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/206
  • Upgrade feature Intended for by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/207
  • [ENH] Upgrade custom entities by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/208
  • [FIX] Broken scaffold no more by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/209
  • [FIX,ENH] - Improve dcm2bids_helper mod by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/210
  • Generalization of sidecarchanges using ids by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/213
  • [ENH] dataType -> datatype and modalityLabel -> suffix by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/214
  • Fix log n version by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/219
  • [BF] valid participant by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/215
  • Allow a criteria item to be a dict with a key - any (or) or all (and) by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/217
  • Add an option to use duplicates instead of runs as suggested in heudiconv project. by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/218
  • [BF] Valid session by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/222
  • add test helper by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/220
  • [BF] dcm2bids_scaffold by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/224
  • prevent doc deployment by pushing to master by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/226
  • [ENH] Add major OS executables on new release by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/221
  • [ENH] Generalization of defaceTpl to post_op by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/225
  • [ENH] Rename all cap var by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/227
  • Revert doc to 2.1.9 by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/228
  • Automated version-control documentation for 2.1.9 and up by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/231
  • Fix GHA for docs + layouts by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/234
  • [ENH] Add float comparison by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/229
  • [Quick Fix] Add specific message when no acquisition was found by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/235
  • Fix typo srcfile dstfile by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/236
  • Improve doc for v3.0.0 by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/223

New Contributors

  • @Remi-Gau made their first contribution in https://github.com/UNFmontreal/Dcm2Bids/pull/183

Full Changelog: https://github.com/UNFmontreal/Dcm2Bids/compare/2.1.8...3.0.0rc1

- Python
Published by arnaudbore over 2 years ago

dcm2bids - 2.1.9

I had some issues with pypi. Sorry for this.

What's Changed

  • Fix if dot in dcm files names by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/169
  • Support output_dir override #170 by @GMerakis in https://github.com/UNFmontreal/Dcm2Bids/pull/171
  • BF - forgot bval bvec by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/172

New Contributors

  • @GMerakis made their first contribution in https://github.com/UNFmontreal/Dcm2Bids/pull/171

Full Changelog: https://github.com/UNFmontreal/Dcm2Bids/compare/2.1.7...2.1.9

- Python
Published by arnaudbore over 3 years ago

dcm2bids - 2.1.8

This will be our last PR before moving to a new API.

What's Changed

  • Fix if dot in dcm files names by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/169
  • Support output_dir override #170 by @GMerakis in https://github.com/UNFmontreal/Dcm2Bids/pull/171
  • BF - forgot bval bvec by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/172

New Contributors

  • @GMerakis made their first contribution in https://github.com/UNFmontreal/Dcm2Bids/pull/171

Full Changelog: https://github.com/UNFmontreal/Dcm2Bids/compare/2.1.7...2.1.8

- Python
Published by arnaudbore over 3 years ago

dcm2bids - 2.1.7

Thank you to everyone who was involved in this release.

Last time I said "more to come soon" this time I won't commit to anything.

BUT we already have plan to make a major break release jumping directly to 3.0.0 and add more flexibility to the searchMethod.

See you soon with a new release :laughing:

What's Changed

  • [BUG, ENH] - fix erroneous install command by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/128
  • Fix #130 by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/131
  • Minor doc updates by @jstaph in https://github.com/UNFmontreal/Dcm2Bids/pull/148
  • [DOC] fix a few typos in config docs by @keithcallenberg in https://github.com/UNFmontreal/Dcm2Bids/pull/150
  • reformat tables in oneliners by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/155
  • [WIP] Remove python3.6 by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/156
  • [BF] fix intendedFor by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/107
  • [WIP] Fix Entity Table Order by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/157
  • [BUG, ENH] Update tutorial and documentation by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/162
  • [WIP][BF] dcm2bids_helper by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/161
  • Fix windows paths patch by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/163
  • [DOC][ENH] - Add instructions with Anaconda Navigator + Warning about spaces in paths by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/165
  • Fix windows paths by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/158
  • [FIX] freeze doc packages by @SamGuay in https://github.com/UNFmontreal/Dcm2Bids/pull/166
  • [FIX] Add a timeout when trying to retrieve dcm2bids version by @po09i in https://github.com/UNFmontreal/Dcm2Bids/pull/154
  • fix re option by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/167
  • updateto2.1.7 by @arnaudbore in https://github.com/UNFmontreal/Dcm2Bids/pull/168

New Contributors

  • @jstaph made their first contribution in https://github.com/UNFmontreal/Dcm2Bids/pull/148
  • @keithcallenberg made their first contribution in https://github.com/UNFmontreal/Dcm2Bids/pull/150
  • @po09i made their first contribution in https://github.com/UNFmontreal/Dcm2Bids/pull/154

Full Changelog: https://github.com/UNFmontreal/Dcm2Bids/compare/2.1.6...2.1.7

- Python
Published by arnaudbore over 3 years ago

dcm2bids - 2.1.6

Welcome 2.1.6 !!

Brand new documentation !!!

Discussions are now open. Come introduce yourself :+1:

You can install dcm2bids using conda. :confetti_ball:

Thank you to everyone who was involved in this release. More to come soon!

- Python
Published by arnaudbore almost 5 years ago

dcm2bids - 2.1.6rc1

First time with the new package system - New Containers - Fix pypi package

- Python
Published by arnaudbore about 5 years ago

dcm2bids - 2.1.5

  • Possibility to not be case sensitive
  • Fix #34

- Python
Published by arnaudbore about 5 years ago

dcm2bids -

  • Add a tutorial to the documentation
  • Update BIDS version in dcm2bids_scaffold
  • Bug fix when intendedFor was equal to 0
  • Restructuring of the documentation and add version description

- Python
Published by cbedetti almost 7 years ago

dcm2bids -

  • New documentation with mkdocs
  • dicom_dir can be a list or str

- Python
Published by cbedetti almost 7 years ago

dcm2bids -

- Python
Published by cbedetti almost 7 years ago

dcm2bids -

  • Checking if a new version of dcm2bids or dcm2niix is available on github
  • dcm2niix output is now log to file as debug
  • Add dcm2bids version to sidecars
  • intendedFor option can also be a list

- Python
Published by cbedetti almost 7 years ago

dcm2bids -

  • The anonymizer option no longer exists from the script dcm2bids. It is still possible to deface the anatomical nifti images using the "defaceTpl" key in the congifuration file.
  • Acquisitions are now sorted using the sidecar data instead of only the sidecar filename. The default behaviour is to sort by SeriesNumber then by AcquisitionTime then by the SidecarFilename. You can change this behaviour setting the key "compKeys" inside the configuration file.
  • Add an option to use regular expression operations for more flexibility for matching criteria. Set the key "searchMethod" to "re" in the config file. fnmatch is still the default.
  • Design fix in matching with list in the sidecar.
  • Sidecar modification using "sidecarChanges" in the configuration file.
  • intendedFor option for fieldmap in the configuration file
  • log improvement
  • major code refactoring
  • add docstrings
  • add tests with pytest

- Python
Published by cbedetti almost 7 years ago

dcm2bids -

  • Add dcm2bids as runscript inside Singularity
  • Remove logger from dcm2bids_helper

- Python
Published by cbedetti almost 7 years ago