qslib -

Reimplement core communication and parsing code in Rust.
Improve cli commands, in particular, list-stored and get-eds.
Add more parsing and typing to Machine.list_runs_in_storage and Machine.list_files (breaking change if relying on atime/mtime/ctime being floats instead of datetime objects).
Use setuptools_scm to write version number.

- Python
Published by cgevans about 1 year ago

qslib - v0.13.0

Add PlateSetup.from_picklist method to generate a PlateSetup from a Kithairon PickList, if Kithairon is installed.
Improve ssl support for monitor.
Have monitor complain to matrix if it exits unexpectedly.
Fix compile_eds when there is no folder to compile (if, eg, something else has already compiled the EDS).

- Python
Published by cgevans over 1 year ago

qslib - v0.12.0

Machine.block command to directly control block temperatures.
Certificate support for SSL, and new connection recommendations.
Stage lines and event spans now are now not plotted if they are outside of the selected time range / stages.
Step now supports repeats.
Stage.stepped_ramp can now take multiple data points per temperature.
Fix hanging connection bug.

- Python
Published by cgevans over 1 year ago

qslib - v0.11.0

Initial support for 384-well blocks, at least in data/file reading.
Initial support for v2.0 EDS specification machines (eg, QS6Pro), at least in data/file reading.
Parsing of multicomponent data for v1 and v2 machines, and partial analysis data for v1 machines.
Available data is shown in experiment information.
Change license to EUPL-1.2.
Fixes for new matplotlib versions.
Support for Python 3.12.

- Python
Published by cgevans over 2 years ago

qslib - v0.10.1

SSL/non-SSL autoconnection speed improvements
Drawer/cover annotation improvements

- Python
Published by cgevans almost 3 years ago

qslib - v0.10.0

Add annotations to plots for drawer and cover open and close events.
Add support for SSL / firmware 1.3.4.

- Python
Published by cgevans almost 3 years ago

qslib - v0.9.4

Fix multi-temperature plotting bug.

- Python
Published by cgevans almost 3 years ago

qslib - v0.9.3

Update dependencies, convert to pyproject.toml.
Fix cycle selection and direct pandas selection for normalization processes.

- Python
Published by cgevans almost 3 years ago

qslib - v0.9.2

Fix a communications bug where a packet that can cause commands to hang in certain rare situations.

- Python
Published by cgevans almost 3 years ago

qslib - v0.9.1

Version 0.9.1

Minor bug fixes and dependency updates (to fix pandas errors).
Fixes to support Pandas 2.0.
Ensure that some invalid characters are not used in machine names.
Check for files with and without spaces on machine when loading a new experiment (in case run was started outside of qslib).
Parse IOError messages from the machine.

- Python
Published by cgevans about 3 years ago

qslib - v0.9.0

Version 0.9.0

Fix Stage.stepped_ramp when all temperature increments are the same, but temperatures are not.
Add a start_increment option to Stage.stepped_ramp for cases where the user does not want the ramp to actually start at the starting temperature, but at the first increment away from it (eg, when continuing a previous ramp).
Ensure that units are delta units when appropriate in protocols, regardless of whether the user entered them as delta units (eg, so "2°C" will work as a temperature step).

- Python
Published by cgevans about 3 years ago

qslib - v0.8.2

Version 0.8.2

Add check for existing, completed EDS files with same name, and option to Experiment.run to overwrite completed or working files.
Fix XML protocol parsing bug for increment units with non-qslib EDS files.
Fix stage lines in plots.
Improve error messages.

- Python
Published by cgevans over 3 years ago

qslib - v0.8.1

See tag notes.

- Python
Published by cgevans almost 4 years ago

qslib - v0.8.0

Ensure that protocols don't have incorrect stage index and label information when being sent to machine.
MachineStatus now includes temperature information, as does the qslib machine-status CLI command.
Experiment.sync_from_machine can exclude tiffs, and has better logging.
Custom steps are now approximated in xml files, keeping them somewhat compatible with the machine's android interface.
Several testing and documentation improvements.
Python 3.11 fixes.

- Python
Published by cgevans almost 4 years ago

qslib - v0.7.1

QSLib-initiated experiments should now be partially compatible with the machine's android interface. Status, time, and the (possibly approximate) protocol should be displayed. Data and samples will likely not. Pause/resume/stop/open/close buttons on the interface should function properly.
Processor and plotting improvements.

- Python
Published by cgevans about 4 years ago

qslib - v0.7.0

Protocol now has Protocol.stage, and Stage now has Stage.step, to provide convenient, 1-indexed access, such that protocol.stage[5] of is stage 5 of protocol, not stage 6.
Protocol now supports setting PRERUN and POSTRUN stages, as a series of SCPI commands. This allows the setting of things like idling temperatures and exposure times. It is not easily usable yet, however.
Experiment.change_protocol_from_now allows convenient changes to a currently-running experiment.
Normalization has been renamed to Processor. Plotting functions can take sequences of processors to process data. These now include:
- Normalization as before: NormByMeanPerWell, NormByMaxPerWell
- SubtractMeanPerWell: subtracts the mean of a particular region, applied to each well.
- SmoothEMWMean: smooths data using Pandas' ExponentialMovingWindow.mean.
- SmoothWindowMean: smooths data using Pandas' Rolling.mean or Window.mean.
Some initial implementation changes to allow repeated steps (not stages).
Fixes bug that prevented loading of some aborted runs.
Fixes monitor's recording of temperatures.
Experiment.allfilters uses data if it exists; Experiment.filterstrings as a convenience function alternative.
SCPICommand parsing improvements.
Protocol printing improvements.

- Python
Published by cgevans about 4 years ago