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spectravis

An interactive web-based neuroscience app for analyzing task-related functional networks over time and frequency

https://github.com/neurophysvis/spectravis

Science Score: 64.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ✓
    Committers with academic emails
    6 of 9 committers (66.7%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (13.4%) to scientific vocabulary

Keywords

d3js electrophysiology neuroscience visualization
Last synced: 6 months ago · JSON representation ·

Repository

An interactive web-based neuroscience app for analyzing task-related functional networks over time and frequency

Basic Info
Statistics
  • Stars: 37
  • Watchers: 6
  • Forks: 12
  • Open Issues: 21
  • Releases: 2
Topics
d3js electrophysiology neuroscience visualization
Created over 11 years ago · Last pushed over 3 years ago
Metadata Files
Readme License Citation

README.md

DOI

SpectraVis

An interactive network visualization tool for exploring functional brain connectivity using d3.js. See this for an example of SpectraVis in action.

SpectraVis allows you to: + examine how network dynamics change over time and frequency + compare local (statistical dependencies between a single pair of nodes) and global (statistical dependencies between all nodes) dynamics. + compare different types of functional connectivity measures (correlation, coherence). + compare between different subjects. + examine only within- or between-brain area connections + switch between multiple network views for better understanding of the network structure

Installation

To install SpectraVis, download the latest release: + https://github.com/edeno/SpectraVis/releases

Or use Node.js and its package manager (npm):

  1. Open a terminal (Mac) or a Windows Command Prompt (Start > All Programs > Accessories > Windows Command Prompt)
  2. Download or clone the repository: git clone https://github.com/edeno/SpectraVis.git
  3. Install Node.js using one of the installers.
  4. Enter in the terminal or command prompt: npm install spectravis

This will install the relevant development dependencies. Running gulp in the terminal will automatically launch a webserver on http://localhost:8000/ where you can view the visualization.

Usage

spectravis.init(params) starts the visualization in index.html.

See the wiki for more information on how to view the visualization on your local machine, the expected structure of the data, and converting data from Matlab to JSON.

Modifying and Contributing

Fork, then clone the repo: git clone git@github.com/your-username/SpectraVis.git Use npm install to get the development dependencies. Place your Data in app/DATA/.

Push to your fork and submit a pull request to the develop branch.

License

GPL-v2

Owner

  • Name: NeurophysVis
  • Login: NeurophysVis
  • Kind: organization

Citation (CITATION.cff) 

# YAML 1.2
# Metadata for citation of this software according to the CFF format (https://citation-file-format.github.io/)
cff-version: 1.0.3
message: If you use this software, please cite it using these metadata.
# FIXME title as repository name might not be the best name, please make human readable
title: 'NeurophysVis/SpectraVis: v1.1.0'
doi: 10.5281/zenodo.1218014
# FIXME splitting of full names is error prone, please check if given/family name are correct
authors:
- given-names: Eric
  family-names: Denovellis
  affiliation: Boston University
- given-names: Emily
  family-names: Stephen
version: 1.1.1
date-released: 2018-04-13
repository-code: https://github.com/NeurophysVis/SpectraVis
license: other-open

GitHub Events

Total
  • Fork event: 1
Last Year
  • Fork event: 1

Committers

Last synced: about 2 years ago

All Time
  • Total Commits: 245
  • Total Committers: 9
  • Avg Commits per committer: 27.222
  • Development Distribution Score (DDS): 0.482
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
edeno e****o@b****u 127
edeno e****o 77
Eric Denovellis e****o@E****l 24
Emily Stephen e****n@b****u 7
Emily Stephen e****4@g****m 5
Eric Denovellis e****o@w****u 2
edeno e****o@w****u 1
Eric Denovellis e****o@w****u 1
Eric Denovellis e****o@w****u 1
Committer Domains (Top 20 + Academic)
bu.edu: 2 wireless1x-155-41-98-215.bu.edu: 1 wireless1x-155-41-125-34.bu.edu: 1 wireless1x-155-41-122-224.bu.edu: 1 wireless1x-155-41-127-176.bu.edu: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 42
  • Total pull requests: 0
  • Average time to close issues: 2 months
  • Average time to close pull requests: N/A
  • Total issue authors: 1
  • Total pull request authors: 0
  • Average comments per issue: 0.17
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • edeno (41)
Pull Request Authors
Top Labels
Issue Labels
enhancement (28) question (6) bug (5)
Pull Request Labels

Packages

  • Total packages: 2
  • Total downloads: unknown
  • Total dependent packages: 0
    (may contain duplicates)
  • Total dependent repositories: 0
    (may contain duplicates)
  • Total versions: 2
proxy.golang.org: github.com/NeurophysVis/SpectraVis
  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 6.4%
Average: 6.7%
Dependent repos count: 6.9%
Last synced: 6 months ago
proxy.golang.org: github.com/neurophysvis/spectravis
  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 6.4%
Average: 6.7%
Dependent repos count: 6.9%
Last synced: 6 months ago

Dependencies

bower.json bower
  • bootstrap ~3.3.6
  • colorbrewer ~1.0.0
  • d3 ~3.5.10
  • d3-legend ~1.6.0
  • queue-async ~1.0.7
  • spin.js ~2.3.2
package.json npm
  • bower ^1.4.1 development
  • gulp ^3.9.0 development
  • gulp-autoprefixer ^2.3.1 development
  • gulp-concat ^2.6.0 development
  • gulp-connect ^2.2.0 development
  • gulp-cssmin ^0.1.7 development
  • gulp-imagemin ^2.3.0 development
  • gulp-jsonminify ^1.0.0 development
  • gulp-plumber ^1.0.1 development
  • gulp-rename ^1.2.2 development
  • gulp-streamify 0.0.5 development
  • gulp-uglify ^1.2.0 development
  • gulp-util ^3.0.6 development
  • gulp-watch ^4.3.5 development
  • gulp-zip ^3.0.2 development
  • imagemin-pngquant ^4.1.2 development
  • d3-save-svg 0.0.2