https://github.com/aevenstad/containerize_conda_env
Instructions on how to containarize a conda environment using Singularity/Apptainer
Science Score: 13.0%
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Low similarity (2.8%) to scientific vocabulary
Last synced: 10 months ago
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Repository
Instructions on how to containarize a conda environment using Singularity/Apptainer
Basic Info
- Host: GitHub
- Owner: aevenstad
- License: mit
- Default Branch: main
- Size: 4.88 KB
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- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Created almost 2 years ago
· Last pushed over 1 year ago
Metadata Files
Readme
License
README.md
Containerize a conda environment
Instructions on how to containarize a conda environment using Singularity/Apptainer
Define environment in yaml file
Use a .yml file to define your conda environment. This file needs to be in the same folder as miniconda.def during the build.
Build container image
With singularity/apptainer build the environment from the definition file:
singularity build ${environment}.sif miniconda.def
List packages installed in the environment
singularity exec ${environment}.sif conda list
Owner
- Name: Andreas Evenstad
- Login: aevenstad
- Kind: user
- Location: Norway
- Company: University of Tromsø
- Repositories: 2
- Profile: https://github.com/aevenstad
GitHub Events
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- Push event: 2
Last Year
- Push event: 2