deeprvat
Science Score: 39.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 2 DOI reference(s) in README -
○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (4.9%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: PMBio
- License: other
- Language: Python
- Default Branch: main
- Size: 320 MB
Statistics
- Stars: 38
- Watchers: 13
- Forks: 6
- Open Issues: 7
- Releases: 6
Metadata Files
README.md
DeepRVAT
Rare variant association testing using deep learning and data-driven burden scores
Installation and usage
Please consult our documentation
Citation
If you use this package, please cite:
Clarke, B., Holtkamp, E. et al. Integration of variant annotations using deep set networks boosts rare variant association testing. Nat Genet 56, 22712280 (2024). https://doi.org/10.1038/s41588-024-01919-z
Credits
Portions of code for the seed gene discovery methods have been adapted from SEAK
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.
Cookiecutter: https://github.com/audreyr/cookiecutter
audreyr/cookiecutter-pypackage: https://github.com/audreyr/cookiecutter-pypackage
Owner
- Name: Probabilistic Models in Biology
- Login: PMBio
- Kind: organization
- Repositories: 49
- Profile: https://github.com/PMBio
GitHub Events
Total
- Create event: 27
- Release event: 4
- Issues event: 40
- Watch event: 10
- Delete event: 7
- Member event: 1
- Issue comment event: 55
- Push event: 68
- Pull request review event: 9
- Pull request event: 24
- Fork event: 5
Last Year
- Create event: 27
- Release event: 4
- Issues event: 40
- Watch event: 10
- Delete event: 7
- Member event: 1
- Issue comment event: 55
- Push event: 68
- Pull request review event: 9
- Pull request event: 24
- Fork event: 5
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 16
- Total pull requests: 5
- Average time to close issues: about 1 month
- Average time to close pull requests: 22 days
- Total issue authors: 7
- Total pull request authors: 2
- Average comments per issue: 2.44
- Average comments per pull request: 0.0
- Merged pull requests: 3
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 15
- Pull requests: 5
- Average time to close issues: 25 days
- Average time to close pull requests: 22 days
- Issue authors: 6
- Pull request authors: 2
- Average comments per issue: 2.0
- Average comments per pull request: 0.0
- Merged pull requests: 3
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- PaulineTL (10)
- Jonas-B-Frank (10)
- pichuan (4)
- maia-munteanu (3)
- bfclarke (3)
- Antonio-Nappi (2)
- endast (2)
- m4mbo (1)
- rdey-insitro (1)
- trevorcousins (1)
- AppWick-hub (1)
- boutrys (1)
- MZoodsma (1)
- OmerRonen (1)
Pull Request Authors
- Marcel-Mueck (28)
- endast (20)
- meyerkm (14)
- HolEv (7)
- bfclarke (5)
- fmunzlin (1)
- lattaai4 (1)