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https://github.com/agentschapplantentuinmeise/meisecsi

MeiseBG Crop Source Investigations platform

https://github.com/agentschapplantentuinmeise/meisecsi

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.2%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

MeiseBG Crop Source Investigations platform

Basic Info
  • Host: GitHub
  • Owner: AgentschapPlantentuinMeise
  • License: mit
  • Language: Python
  • Default Branch: main
  • Homepage:
  • Size: 9.62 MB
Statistics
  • Stars: 0
  • Watchers: 3
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 1 year ago · Last pushed 11 months ago
Metadata Files
Readme License

README.md

MeiseCSI

MeiseBG Crop Source Investigations platform

Reproducible Infrastructure as Code

You can install pulumi with the package manager of your OS - MacOS: brew install pulumi/tap/pulumi - Windows: choco install pulumi - Linux: curl -fsSL https://get.pulumi.com | sh

Starting up

mkdir rice
pulumi new # e.g. choose aws-python
python3 -m venv C:\Users\$USERNAME\repos\MeiseCSI\rice\venv
C:\Users\$USERNAME\repos\MeiseCSI\rice\venv\Scripts\python -m pip \
  install --upgrade pip setuptools wheel
C:\Users\$USERNAME\repos\MeiseCSI\rice\venv\Scripts\python -m pip \
  install -r requirements.txt
cd rice
pulumi up

Create environment for secrets

pulumi env init mcsi/dev

Build container

docker build -t mcsi -f rice/con/Dockerfile .
docker run -v /c/Users/$USERNAME/repos/MeiseCSI:/app -p 5000:5000 -it mcsi /bin/bash

Update container on live server

sudo su - -l mcsi
docker stop mcsiserver
docker remove mcsiserver
cd repos/MeiseCSI/
git pull origin
docker build --build-arg USER_ID=$(id -u) \
--build-arg GROUP_ID=$(id -g) \
-t localhost/webapp -f rice/con/Dockerfile .
docker run -d -p 5000:5000 -e BADMIN_INIT='ton~1873' -v
~/instance:/app/src/instance --name mcsiserver localhost/webapp
docker exec -it mcsiserver /bin/bash
mkdir migrations
flask db init
flask db migrate -m'new migration'
flask db upgrade

If you need to remove previous migrations

import sqlite3
conn = sqlite3.connect('instance/mcsi.db')
cursor = conn.cursor()
cursor.execute("SELECT name FROM sqlite_master WHERE type='table';")
print(cursor.fetchall())
cursor.execute("DELETE FROM alembic_version;")
conn.commit()
conn.close()

Owner

  • Name: Botanic Garden Meise
  • Login: AgentschapPlantentuinMeise
  • Kind: organization
  • Email: quentin.groom@plantentuinmeise.be
  • Location: Meise, Belgium

GitHub Events

Total
  • Member event: 1
  • Push event: 38
  • Create event: 2
Last Year
  • Member event: 1
  • Push event: 38
  • Create event: 2