https://github.com/agoose77/awkward-1.0

Manipulate JSON-like data with NumPy-like idioms.

https://github.com/agoose77/awkward-1.0

Science Score: 41.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
  • .zenodo.json file
  • DOI references
    Found 3 DOI reference(s) in README
  • Academic publication links
    Links to: zenodo.org
  • Academic email domains
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  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (11.1%) to scientific vocabulary
Last synced: 10 months ago · JSON representation ·

Repository

Manipulate JSON-like data with NumPy-like idioms.

Basic Info
  • Host: GitHub
  • Owner: agoose77
  • License: bsd-3-clause
  • Language: Python
  • Default Branch: main
  • Homepage: https://awkward-array.org
  • Size: 17.2 MB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 3
  • Releases: 0
Fork of scikit-hep/awkward
Created about 5 years ago · Last pushed over 3 years ago
Metadata Files
Readme Contributing License Citation

README-pypi.md

PyPI version Conda-Forge Python 3.6‒3.10 BSD-3 Clause License Continuous integration tests

Scikit-HEP NSF-1836650 DOI Documentation Gitter

Awkward Array is a library for nested, variable-sized data, including arbitrary-length lists, records, mixed types, and missing data, using NumPy-like idioms.

Arrays are dynamically typed, but operations on them are compiled and fast. Their behavior coincides with NumPy when array dimensions are regular and generalizes when they're not.

Motivating example

Given an array of objects with x, y fields and variable-length nested lists like

python array = ak.Array([ [{"x": 1.1, "y": [1]}, {"x": 2.2, "y": [1, 2]}, {"x": 3.3, "y": [1, 2, 3]}], [], [{"x": 4.4, "y": {1, 2, 3, 4]}, {"x": 5.5, "y": [1, 2, 3, 4, 5]}] ])

the following slices out the y values, drops the first element from each inner list, and runs NumPy's np.square function on everything that is left:

python output = np.square(array["y", ..., 1:])

The result is

python [ [[], [4], [4, 9]], [], [[4, 9, 16], [4, 9, 16, 25]] ]

The equivalent using only Python is

python output = [] for sublist in array: tmp1 = [] for record in sublist: tmp2 = [] for number in record["y"][1:]: tmp2.append(np.square(number)) tmp1.append(tmp2) output.append(tmp1)

Not only is the expression using Awkward Arrays more concise, using idioms familiar from NumPy, but it's much faster and uses less memory.

For a similar problem 10 million times larger than the one above (on a single-threaded 2.2 GHz processor),

  • the Awkward Array one-liner takes 4.6 seconds to run and uses 2.1 GB of memory,
  • the equivalent using Python lists and dicts takes 138 seconds to run and uses 22 GB of memory.

Speed and memory factors in the double digits are common because we're replacing Python's dynamically typed, pointer-chasing virtual machine with type-specialized, precompiled routines on contiguous data. (In other words, for the same reasons as NumPy.) Even higher speedups are possible when Awkward Array is paired with Numba.

Our presentation at SciPy 2020 provides a good introduction, showing how to use these arrays in a real analysis.

Installation

Awkward Array can be installed from PyPI using pip:

bash pip install awkward

You will likely get a precompiled binary (wheel), depending on your operating system and Python version. If not, pip attempts to compile from source (which requires a C++ compiler, make, and CMake).

Awkward Array is also available using conda, which always installs a binary: bash conda install -c conda-forge awkward

If you have already added conda-forge as a channel, the -c conda-forge is unnecessary. Adding the channel is recommended because it ensures that all of your packages use compatible versions:

bash conda config --add channels conda-forge conda update --all

Getting help

How-to tutorials

Python API reference

C++ API reference

Owner

  • Name: Angus Hollands
  • Login: agoose77
  • Kind: user
  • Location: United Kingdom
  • Company: 2i2c

Open Source Infrastructure Engineer @ 2i2c. Executable Books core team member. PhD in Nuclear Physics from the University of Birmingham.

Citation (CITATION.cff)

cff-version: 1.2.0
title: "Awkward Array"
message: "If you use this software, please cite it as below."
doi: "10.5281/zenodo.4341376"
date-released: "2018-10-12"
authors:
- family-names: "Pivarski"
  given-names: "Jim"
  affiliation: "Princeton University"
  orcid: "https://orcid.org/0000-0002-6649-343X"
  email: "pivarski@princeton.edu"
- family-names: "Osborne"
  given-names: "Ianna"
  affiliation: "Princeton University"
  orcid: "https://orcid.org/0000-0002-6955-1033"
  email: "iosborne@princeton.edu"
- family-names: "Ifrim"
  given-names: "Ioana"
  affiliation: "Princeton University"
  orcid: "https://orcid.org/0000-0002-6932-1385"
  email: "ii3193@princeton.edu"
- family-names: "Schreiner"
  given-names: "Henry"
  affiliation: "Princeton University"
  orcid: "https://orcid.org/0000-0002-7833-783X"
  email: "henryfs@princeton.edu"
- family-names: "Hollands"
  given-names: "Angus"
  affiliation: "University of Birmingham"
  orcid: "https://orcid.org/0000-0003-0788-3814"
  email: "goosey15@gmail.com"
- family-names: "Biswas"
  given-names: "Anish"
  affiliation: "Manipal Institute Of Technology"
  orcid: "https://orcid.org/0000-0001-6149-9739"
  email: "anishbiswas271@gmail.com"
- family-names: "Das"
  given-names: "Pratyush"
  affiliation: "Purdue University"
  orcid: "https://orcid.org/0000-0001-8140-0097"
  email: "reikdas@gmail.com"
- family-names: "Roy Choudhury"
  given-names: "Santam"
  affiliation: "National Institute of Technology, Durgapur"
  orcid: "https://orcid.org/0000-0003-0153-9748"
  email: "santamdev404@gmail.com"
- family-names: "Smith"
  given-names: "Nicholas"
  affiliation: "Fermilab"
  orcid: "https://orcid.org/0000-0002-0324-3054"
  email: "nick.smith@cern.ch"

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dependencies (15)

Dependencies

.github/workflows/tests.yml actions
  • actions/checkout v3 composite
  • actions/upload-artifact v3 composite
  • pypa/cibuildwheel v2.8.0 composite
.github/workflows/wheels.yml actions
  • actions/checkout v3 composite
  • actions/download-artifact v3 composite
  • actions/upload-artifact v3 composite
  • docker/setup-qemu-action v2.0.0 composite
  • pypa/cibuildwheel v2.8.0 composite
  • pypa/gh-action-pypi-publish v1.5.0 composite
docs-sphinx/requirements.txt pypi
  • PyYAML *
  • black *
  • lark-parser *
  • pycparser *
  • sphinx >=2.4.4
  • sphinx-rtd-theme >=0.5,<1.0
docs-src/requirements.txt pypi
  • autograd *
  • h5py *
  • jax >=0.2.7
  • jaxlib >=0.1.57
  • jupyter-book *
  • matplotlib *
  • numba >=0.50.0
  • numexpr *
  • numpy >=1.13.1
  • pandas >=0.24.0
  • pyarrow >=2.0.0
  • setuptools *
  • uproot *
  • uproot3 *
requirements-dev.txt pypi
  • PyYAML * development
  • autograd * development
  • flake8 * development
  • fsspec * development
  • jax >=0.2.7 development
  • jaxlib >=0.1.57, development
  • numba >=0.50.0 development
  • numexpr * development
  • pandas >=0.24.0 development
  • pyarrow >=7.0.0 development
requirements-test.txt pypi
  • pytest >=6 test
  • pytest-cov * test
requirements.txt pypi
  • numpy >=1.13.1
  • setuptools *