cedalion - v25.1.0

Changelog

Version 25.1.0 (2025-06-22)

All dependencies have been updated to recent versions. Please rebuild the environment.

New Features:

• Added Schaefer atlas-based parcel labels for ICBM152 and Colin27 head models via FreeSurfer surface mapping, by Shakiba Moradi.
• Spatial and measurement noise regularization options in image reconstruction, by David Boas. (#86)
• Improved import of optode and electrode coordinates, by Nils Harmening. (#95)
• The interfaces for the fluence and sensitivity computations were changed to allow out-of-core computations, by Eike Middell.

• Precomputed sensitivities for all example datasets, including the ninjaCap whole head probe, are availabe in cedalion.datasets, by Eike Middell.

• Make all example notebooks run on Google Colab integration, by Josef Cutler. (#96)

• Added functionality to add synthetic HRFs to resting state data, by Thomas Fischer. (#77)

• Added functionality to add synthetic artifacts to fNIRS data , by Josef Cutler.

• Added AMPD algorithm for heart beat detection from {cite:p}Scholkmann2012, by Isa Musisi.

• Functionality for global physiology removal, by Alexander von Lühmann. (#106)

• Multimodal source decomposition methods, including most CCA variants, by Tomas Codina. (#102)

• The interface to fit GLMs changed. The GLM solver is now based on statsmodels and we integrated the AR-IRLS algorithm, by Ted Huppert and Eike Middell. (#68)

• Added wavelet motion correction from {cite:p}Molavi2012, by Josef Cutler. (#72)

• New multi-view animated image reconstruction plots, by David Boas and Alexander von Lühmann.

• Thresholding and visualizing probe sensitivity to brain parcels, by Alexander von Lühmann.

• Improvements to the time-series plots, by David Boas. (#85, #108)

Bugfixes:

• Correct determination of Cz in LandmarksBuilder1010, by Nils Harmening. (#82)

- Python
Published by emiddell 10 months ago

cedalion - v25.0.0

First named release with contributions from: - Sung Ahn - Jacqueline Behrendt - David Boas - Laura Carlton - Tomás Codina - Josef Cutler - Qianqian Fang - Thomas Fischer - Nils Harmening - Mariia Iudina - Filip Jenko - Eike Middell - Shakiba Moradi - Alexander von Lühmann

Full Changelog: https://github.com/ibs-lab/cedalion/commits/v25.0.0

- Python
Published by emiddell over 1 year ago