https://github.com/agudeloromero/download_fasta_ncbi
Python script for downloading GenBank fasta files
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
-
○DOI references
-
○Academic publication links
-
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (3.7%) to scientific vocabulary
Repository
Python script for downloading GenBank fasta files
Basic Info
- Host: GitHub
- Owner: agudeloromero
- License: mit
- Language: Python
- Default Branch: main
- Size: 268 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
Download FASTA files from NCBI
This is a compilation of scripts for downloading fasta files from NCBI:
1. Download FASTA files from NCBI using an ID using fetch
This Python script downloads GenBank FASTA files. It supports two options: downloading a single reference ID or downloading multiple references from a file.
2. Download Viral Genomes FASTA files and metadata from NCBI using esearch and fetch
This Python script downloads viral genomes in FASTA format from NCBI, as well as the metadata. It both, RefSeq and GenBank databases.
Owner
- Name: Patricia
- Login: agudeloromero
- Kind: user
- Location: Perth, Australia
- Company: Telethon Kids Institute
- Website: https://scholar.google.com.au/citations?hl=en&user=mxa1AQ0AAAAJ
- Twitter: P_AgudeloRomero
- Repositories: 2
- Profile: https://github.com/agudeloromero
Mother and computational biologist. Studying host-microbiome interaction. Having fun coding :)
GitHub Events
Total
- Push event: 178
- Fork event: 1
- Create event: 2
Last Year
- Push event: 178
- Fork event: 1
- Create event: 2