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https://github.com/ahmedmoustafa/gene-expression-datasets

Collection of gene expression datasets

https://github.com/ahmedmoustafa/gene-expression-datasets

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

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    CITATION.cff file
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    codemeta.json file
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    .zenodo.json file
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    DOI references
  • ✓
    Academic publication links
    Links to: pubmed.ncbi, ncbi.nlm.nih.gov
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    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
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    Scientific vocabulary similarity
    Low similarity (4.8%) to scientific vocabulary

Keywords

datasets gene-expression microarray microarray-data microarray-data-analysis rna-seq rna-seq-datasets transciptomics
Last synced: 5 months ago · JSON representation

Repository

Collection of gene expression datasets

Basic Info
  • Host: GitHub
  • Owner: ahmedmoustafa
  • License: cc0-1.0
  • Default Branch: main
  • Homepage:
  • Size: 22.9 MB
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Topics
datasets gene-expression microarray microarray-data microarray-data-analysis rna-seq rna-seq-datasets transciptomics
Created over 4 years ago · Last pushed over 2 years ago
Metadata Files
Readme License

README.md

Gene Expression Datasets

DNA

This repository is a collection of published gene expression datasets, generated using, mainly and classically, microarray and RNA-Seq studies. These datasets are used for group projects on gene expression data analysis at AUC.

Datasets

The following table lists the currently available datasets in the repository sorted somehow according to the complexity (number of conditions) of the dataset:

| Dataset | Description | Organism | NCBI PMID | NCBI GEO | | --- | --- | --- | --- | --- | | IRF6 | Cleft lip and palate | Mouse | 17041601 | GSE5800 | | HDAC1 | Histone deacetylase 1 | Mouse | 16940178 | GSE5583 | | Huntington's | Huntington's disease | Human | 16043692 | GSE8762 | | Parkinson's | Parkinson's disease | Human | 26510930 | GSE72267 | | Leukemia | Acute myeloid leukemia (AML) and acute lymphoblastic leukemia (ALL) | Human | 10521349 | | | African Apes | Human and African great ape fibroblasts | Multiple | 12840040 | GSE426 & GSE429 | | Primates Diet | Liver | Mouse | 18231591 | GSE6285 | | Medulloblastoma | Brain tumour | Human | 22722829 | GSE37418 | | COVID-19 | COVID-19 severity | Human | 33096026 | GSE157103 | | Cell Cycle | Cell cycle | Yeast | 9843569 | | | Cognitive Aging | Cognitive Aging | Rat | 19211887 | GSE9990 |

Owner

  • Name: Ahmed Moustafa
  • Login: ahmedmoustafa
  • Kind: user
  • Location: Egypt
  • Company: American University in Cairo

Bioinformatics and Genomics Data Scientist

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