Recent Releases of ReSurfEMG
ReSurfEMG - v1.1.0
Commits
- 2651168: Reverse changelog order (rspwarnaarUT) #363
- 6282d0f: class AdichtReader added (t_barth) #365
- ce76e11: Format adicht_reader.py docstring (Rob Warnaar) #365
- fe21329: Move new requirements to pyproject file (Rob Warnaar) #365
- 44c3a9c: WIP Move example to notebook (Rob Warnaar) #365
- 9a989bf: Linting adicht_reader.py (Rob Warnaar) #365
- Incorporate adichtreader in converterfunctions #365 (rspwarnaarUT)
- 75b73c4: WIP Synthetic data (Rob Warnaar) #365
- fb201ae: adicht_reader sanitize documentation. Add idx (start indexing by 0, default) and ID (start indexing by 1) options (rspwarnaarUT) #365
- 98154cc: Update example adicht_reader notebook (rspwarnaarUT) #365
- 159a585: adi only available on windows (rspwarnaarUT) #365
- daaf118: WIP implement converter_functions tests (rspwarnaarUT) #365
- 6209217: WIP Streamline adichtreader functionality (rspwarnaarUT) #365
- c5598bc: recordid vs recordidx fix and linting (rspwarnaarUT) #365
- d928fda: Update adicht example (rspwarnaarUT) #365
- 43c1226: Add multi fs warnings (rspwarnaarUT) #365
- 930f4e5: Also test on win and osx when PR to main (rspwarnaarUT) #365
- a3865a9: Fix github action venv (rspwarnaarUT) #365
- 93940b9: Fix osx windows tests try 3 (rspwarnaarUT) #365
- f1828d2: Fix osx win sanity try 4 (rspwarnaarUT) #365
- 6f8b023: Fix win osx test try 5 (rspwarnaarUT) #365
- 9fcb0f9: Fix sphinx formatting errors (rspwarnaarUT) #365
- dea4322: Mock adi in sphinx docs (rspwarnaarUT) #365
- 30b5d9e: Fix sphinx autodoc (rspwarnaarUT) #365
- 3b30ee2: Add idx to adicht metadata (rspwarnaarUT) #365
- 09340a5: Prevent adicht_reader import on other plat (rspwarnaarUT) #365
- 5243219: Fix linting (rspwarnaarUT) #365
- aedec42: Fix Sphinx to also ignore adicht_reader (rspwarnaarUT) #365
- 3109783: Ignore adicht_reader in sphinx (rspwarnaarUT) #365
- f0cff49: Alternatively, throw error at AdichtReader use rather than import (rspwarnaarUT) #365
- 1455324: Fix sanitize valid_idxs (rspwarnaarUT) #367
- 482ccdc: Fix option sorting in ipy_widgets (rspwarnaarUT) #367
- e3c33ae: Update data_classes documentation (rspwarnaarUT) #367
- d439e42: Fix peakset class to not break at duplicate peakidx (as of linkpeak_set) (rspwarnaarUT) #367
- b7720eb: Fix availability of data in linux test (rspwarnaarUT) #368
- af32c57: Add verbose to poly5reader (rspwarnaarUT) #368
- ca7d40d: Fix dataflipping from df to numpy (rspwarnaarUT) #368
- 04daaab: Update basic pipeline for EMG to ventilator breath relation (rspwarnaarUT) #368
- 63b0fc6: Remove environment.yml to prevent confusion (rspwarnaarUT) #368
- 85ced96: Update changelog (rspwarnaarUT) #368
- 0b97d08: Fix url to readthedocs (rspwarnaarUT) #368
- ca9522a: poly case senstive (rspwarnaarUT) #368
- 6761c9d: Minor bug fixes (rspwarnaarUT) #368
- 9d63fbf: Fix not in convention error (rspwarnaarUT) #368
- 9ea5bc0: Update and prettify sphinx documentation (rspwarnaarUT) #368
- 927f46c: Add get_config method to see all configured paths (rspwarnaarUT) #368
- 6a4f55c: Fix repo_root is none error in config (rspwarnaarUT) #368
- 5d39775: Fix linting (rspwarnaarUT) #368
- c323599: Fix linting error (rspwarnaarUT) #368
- 8c0ae04: Split ECG detection and removal in data classes (rspwarnaarUT) #368
- 06ed834: Prevent duplicate method with run and baseline (rspwarnaarUT) #368
- 5188e0f: Fix read the docs url (rspwarnaarUT) #368
- 488a9bc: Url fix in toml file (rspwarnaarUT) #368
- a2e16e2: Convert timeseries y_ data attributes to dict and allow for dict-indexing according to these names (rspwarnaarUT) #368
- e26a98f: Convert TimeSeries signaltype to signalio=(input, output) to capture both signal input and (rspwarnaarUT) #368
- aa78300: Add .to_numpy method to TimeSeriesGroup (rspwarnaarUT) #368
- afd015a: Add iter method to TimeSeries (rspwarnaarUT) #368
- f5187ca: Fix Sphinx (rspwarnaarUT) #368
- 79508be: add signalio option to detectemg_breaths (rspwarnaarUT) #368
- 2d3815e: Update signalio detectemg_breaths (rspwarnaarUT) #368
- 5d76b2a: Fix tests with new dynamic signal naming (rspwarnaarUT) #368
- ed4b755: Fix ETP calculate with dynamic naming (rspwarnaarUT) #368
- 8edc988: Add ecg to test parameter names (rspwarnaarUT) #368
- aa5b835: Fix Sphinx (rspwarnaarUT) #368
Scientific Software - Peer-reviewed
- Jupyter Notebook
Published by ReSurfEMG 7 months ago
ReSurfEMG - v1.0.2
Commits
- 25ab410: Update url from ReSurfEMG to resurfemg-org (rspwarnaarUT) #360
- 2feb883: Update CHANGELOG for releases 1.0.1 and 1.0.2, fixing config generation issues and updating repo URL (rspwarnaarUT) #361
- ad8b75c: Fix Git workflows and update to py312 (rspwarnaarUT) #362
- 5b3d51a: Fix sphinx workflow (rspwarnaarUT) #362
Scientific Software - Peer-reviewed
- Jupyter Notebook
Published by ReSurfEMG about 1 year ago
ReSurfEMG - v1.0.1
Commits
- 19530b8: Fix file discovery widgets (rspwarnaarUT) #358
- d7f7fbc: Make extensions insensitive for starting . (rspwarnaarUT) #358
- 4b2ec3c: Update DOI badge in README.md to always reflect latest identifier (rspwarnaarUT) #357
- 1485fef: Update citation file (rspwarnaarUT) #357
- 62efce6: Change Mos-Oppersma to Oppersma (rspwarnaarUT) #357
- d78f6dc: Update init files for optimized import functionality (rspwarnaarUT) #356
- 000b1a7: Fix linting (rspwarnaarUT) #356
- 1cda1d4: Fix overwrite config file (rspwarnaarUT) #359
Scientific Software - Peer-reviewed
- Jupyter Notebook
Published by ReSurfEMG about 1 year ago
ReSurfEMG - v1.0.0
Commits
- 6604a47: added periodogram and welch method (ElineOppersma) #316
- 1257aa5: rostack to vstack (deprecated) (ElineOppersma) #316
- b6a906e: ros_stack to vstack (deprecated) (ElineOppersma) #316
- b2cb994: row_stack to vstack (deprecated) (ElineOppersma) #316
- 267a987: added tests and changes for review (ElineOppersma) #316
- e617e42: added patch for mock plot in testing suite (ElineOppersma) #316
- 00d287f: removed plottitle (ElineOppersma) #316
- 01622e4: plot title to general code (ElineOppersma) #316
- 711408a: Tests for time_product and area under the baseline (rspwarnaarUT) #323
- 1f3b088: Implement test for percentage_aub quality criterium (rspwarnaarUT) #323
- 6e919a6: Fix deprecation errors (rspwarnaarUT) #323
- e4e671e: Fix deprecation warnings (rspwarnaarUT) #323
- af6335d: Fix deprecation warnings (rspwarnaarUT) #323
- 74c4c90: Eoppersma/interpeak (#322) (ElineOppersma) #322
- 2816afa: WIP time series plotting (rspwarnaarUT) #325
- 9bfe01f: TimeSeriesData class, including plotting function (rspwarnaarUT) #325
- e2b82d6: Clean pipelines imports and visualization (rspwarnaarUT) #325
- f115b0b: fix np.NaN deprecation (rspwarnaarUT) #325
- 1fb3de4: Clean out notebook (rspwarnaarUT) #325
- 08a84bc: Provide data_classes with docstring (rspwarnaarUT) #325
- 30d32ca: Fix linting (rspwarnaarUT) #325
- 6524532: Split TimeSeries per channel. Include VentilatorDataGroup as child-class (rspwarnaarUT) #325
- 1d634ea: Add marker plotting to full window plot (rspwarnaarUT) #325
- 33cca36: Plot library: Plot individual peaks (rspwarnaarUT) #325
- 0290b6c: Plot markers for full time plot and subplot per peak (rspwarnaarUT) #325
- e122a9c: Move snr_pseudo to quality assessment (rspwarnaarUT) #323
- 4c317ce: Implement test for pseudo_snr (rspwarnaarUT) #323
- 4e9855f: Fix pseudo_snr import in postprocessing test (rspwarnaarUT) #323
- 6c2ae16: Add reference to synthetic data (rspwarnaarUT) #323
- 574bc70: WIP Pocc quality evaluation method (rspwarnaarUT) #323
- 87f7d77: Bug fix in pocc_quality (rspwarnaarUT) #323
- e4dca51: Implement tests for pocc_quality (rspwarnaarUT) #323
- 292db53: Fix naming convention in pocc_quality (rspwarnaarUT) #323
- Time product and area under baseline features #323 (rspwarnaarUT)
- 9507d7b: Time product and AUB: Write docstrings, fix linting (rspwarnaarUT) #323
- ff46f30: Tests for time_product and area under the baseline (rspwarnaarUT) #323
- 9d721f6: Implement test for percentage_aub quality criterium (rspwarnaarUT) #323
- 17eba89: Fix deprecation errors (rspwarnaarUT) #323
- 3c0ccaa: Fix deprecation warnings (rspwarnaarUT) #323
- 948e1a1: Fix deprecation warnings (rspwarnaarUT) #323
- e7ec25e: Eoppersma/interpeak (#322) (ElineOppersma) #323
- 37f6ca4: Move Pocc detection method to event_detection submodule (rspwarnaarUT) #325
- 0726ae9: Implement test for findoccludedbreaths method (rspwarnaarUT) #325
- 222910b: Update exemplary notebooks with new code (rspwarnaarUT) #325
- 1f5d898: Fix docstrings (rspwarnaarUT) #325
- 0a92a71: Implement test for plotpeaks and plotmarkers. (rspwarnaarUT) #325
- 71dd2e7: Merge branch 'release032' into feature/plottinglibrary (rspwarnaarUT) #325
- 5cf36f0: Merge branch 'release032' into feature/plottinglibrary (rspwarnaarUT) #325
- b33a222: Fix merge error (rspwarnaarUT) #325
- d321246: Add gating pipeline and ECG peak detection methods (rspwarnaarUT) #328
- 675baa4: Fix linting (rspwarnaarUT) #328
- 3e6b888: Add synthetic eeot manoeuvre data to test_data (rspwarnaarUT) #328
- d5079e4: Implement tests for detectecgpeaks ecgremovalgating (rspwarnaarUT) #328
- cb6d6c1: Add filtering and gating methods to data_classes (rspwarnaarUT) #328
- a287d20: Feature/plotting library (#325) (rspwarnaarUT) #325
- 989c512: consecutive manoeuvres check function and test (#324) (ElineOppersma) #324
- 33f91a8: arv function (ElineOppersma) #327
- bb311a0: Add exemplary ARV notebook (rspwarnaarUT) #327
- df748f2: Get ARV its own test class (rspwarnaarUT) #327
- 343d464: Rename pocc test data to quietbreathing (rspwarnaarUT) #328
- 0f6266c: Rename ventilator test data tot quiet breathing (rspwarnaarUT) #328
- 19205ac: Add synthetic Pocc data to test_dat (rspwarnaarUT) #328
- f29e915: Fix indexing errors for single channel plots (rspwarnaarUT) #328
- 279b9db: Add ARV method to envelope options (rspwarnaarUT) #328
- f0af6f5: Merge branch 'release032' into feature/pipelines2 (rspwarnaarUT) #328
- ae2e9f5: link peak function: peakset 1 to peakset 2 (rspwarnaarUT) #328
- cf3656e: Automatic EMG quality assessment and peak validity evaluation in TimeSeries object (rspwarnaarUT) #328
- 09dfc40: Implement timeproduct, and automated Pocc qualityassessment in TimeSeries (rspwarnaarUT) #328
- 10bf85e: Convert PeaksSet items to dataframe (rspwarnaarUT) #328
- 533f54f: Update tests for data_classess (Rob Warnaar) #328
- 104a610: Implement test + minor improvent for eventdeteciton.findlinked_peaks (rspwarnaarUT) #328
- ae9b17f: Clean imports in postprocessingtest (rspwarnaarUT) #328
- 6861ac8: Implement test for eventdetection.detectemg_breaths (rspwarnaarUT) #328
- 607118d: Last tests for data_classes (rspwarnaarUT) #328
- 75a850a: Remove ML outputs from repo (rspwarnaarUT) #330
- 117b80b: Move dev notebooks to notebooks/dev (rspwarnaarUT) #330
- a8e90be: Sort open_work folder (rspwarnaarUT) #330
- 41ece2e: Clean researcher_interface (rspwarnaarUT) #330
- 3b37596: Delete ML models (rspwarnaarUT) #330
- 29a6e81: Delete notebooks archive (rspwarnaarUT) #330
- da94224: Move entropy functions to legacy (rspwarnaarUT) #330
- a6d42dd: Clean out rudementary functions (rspwarnaarUT) #330
- 8996b00: Delete commented functions, update changelog (rspwarnaarUT) #330
- 65856b5: Farnaz/bell (#329) (FarSoleimani) #329
- 3936ce1: Merge branch 'release032' into maintaince/cleanfunctions_notebooks (rspwarnaarUT) #330
- 8b69cc2: Add curve-fit to data_class (rspwarnaarUT) #330
- 3ff4998: Naming convention: samplingrate converted to _fs (rspwarnaarUT) #330
- 75d5254: starts --> startidx (rspwarnaarUT) #330
- ae340f9: startss --> startidxs (rspwarnaarUT) #330
- 6f2bfb2: peakss --> peakidxs (rspwarnaarUT) #330
- 8b8981a: peaks --> peakidx (rspwarnaarUT) #330
- 3fd99ee: endss --> endidxs (rspwarnaarUT) #330
- 7069d0c: ends --> endidx (rspwarnaarUT) #330
- 632d3bd: draeger --> vent (rspwarnaarUT) #330
- 9cf7e91: Tidy up (rspwarnaarUT) #330
- f9b7651: Fix import errors in notebooks (rspwarnaarUT) #330
- b061e6f: WIP Update read-me (rspwarnaarUT) #330
- 9169501: Get rid of sys.path.insert. Local install (pip install -e .[dev]) will do (rspwarnaarUT) #330
- 43f37c0: Eliminate sys.path.insert from Sphinx conf.py + minor fixes in docs (rspwarnaarUT) #330
- bd5b2a4: Auto documentation updated (rspwarnaarUT) #330
- 857913f: Get tests to run on test data included in the repo (rspwarnaarUT) #330
- c0ac7e1: Run tests with repo test data (rspwarnaarUT) #330
- 9c6be81: Fix .[tests] install (rspwarnaarUT) #330
- e6b2c91: Fix pytest command (rspwarnaarUT) #330
- a8f89a2: np.trapz deprecated (rspwarnaarUT) #330
- f0df70f: Update readme (rspwarnaarUT) #330
- de6d3eb: Update test data in readme (rspwarnaarUT) #330
- baceb14: Update Notebook guide (rspwarnaarUT) #330
- f95b5ec: Provide basic EMG pipeline examplary annotated notebook (rspwarnaarUT) #330
- 2003ff6: Fully annotated example pipeline (rspwarnaarUT) #330
- 032f3f1: Merge branch 'release032' into feature/pipelines2 (rspwarnaarUT) #328
- 13d14c8: Merge branch 'release032' into maintaince/cleanfunctions_notebooks (rspwarnaarUT) #330
- e26d2cc: Add plot_aub method to TimeSeries object (rspwarnaarUT) #333
- 02fd2e1: Add plot_aub method to TimeSeries object (rspwarnaarUT) #333
- d956c50: Standardize docstring layout, and arguments (rspwarnaarUT) #334
- 6ad24ab: Merge branch 'release032' into maintenance/variablenames (rspwarnaarUT) #334
- 1a0ba37: WIP Software paper notebook (rspwarnaarUT) #335
- ff658af: WIP Software paper notebook (rspwarnaarUT) #335
- 609b850: Merge branch 'release200/papernotebook' of https://github.com/ReSurfEMG/ReSurfEMG into release200/papernotebook (rspwarnaarUT) #335
- a11eec6: Softwarepaper notebook wip (rspwarnaarUT) #335
- 2f3df95: Fix envelope start-up artifacts (rspwarnaarUT) #335
- f95d443: Debug RMS startup artifact (rspwarnaarUT) #335
- d61f021: Fix linting (rspwarnaarUT) #335
- ad8c818: Fix RMS and ARV handling of NaNs (rspwarnaarUT) #335
- ce58121: file_finder function design (rspwarnaarUT) #335
- bf9df15: Maintenance/variable names (#334) (rspwarnaarUT) #334
- 763d22f: File and folder discovery functions (rspwarnaarUT) #335
- 4e2a510: ipywidget for file selection (rspwarnaarUT) #335
- 2c28a45: Update toml file with ipywidgets (rspwarnaarUT) #335
- 1440620: Fix TestIpyWidgets (rspwarnaarUT) #335
- b204be2: Fix np.trapz deprecation (rspwarnaarUT) #335
- ad10b57: Update notebooks with file_discovery functionality (rspwarnaarUT) #335
- 6655869: Merge branch 'release032' into release200/paper_notebook (rspwarnaarUT) #335
- 8c0d6c6: Reorganize submodules (rspwarnaarUT) #336
- f62a5da: Split config test (rspwarnaarUT) #336
- 30a2255: Remove config submodule (rspwarnaarUT) #336
- 3669a42: Fix naming conventions (rspwarnaarUT) #336
- 9f13d50: Add wavelet denoising (rspwarnaarUT) #336
- 57628e5: WIP Fix file_select widget (rspwarnaarUT) #336
- 859fc3d: Update tests (rspwarnaarUT) #336
- fbb2417: Refactor tests in subfolders (rspwarnaarUT) #336
- 9434cf4: Split postprocessing tests (rspwarnaarUT) #336
- 9c7fab3: Restructure preprocessing and math operationstests (rspwarnaarUT) #336
- 39ba7ec: Release 2 0 0/paper notebook (#335) (rspwarnaarUT) #335
- 368ea8f: Implement standard load_file function (rspwarnaarUT) #336
- d127aaf: Eliminate ICA (rspwarnaarUT) #336
- 980eac3: Merge branch 'release032' into release200/wavelet_denoising (rspwarnaarUT) #336
- f7e4aa5: Fix merge of tests (rspwarnaarUT) #336
- 4c239b1: Move running smoother to math operations (rspwarnaarUT) #336
- 23f929d: Update naming conventions (rspwarnaarUT) #336
- e60aa52: Fix naming errors (rspwarnaarUT) #336
- 9d5cd13: Wip rr estimation (rspwarnaarUT) #336
- 22aa345: RR estimation (Rob Warnaar) #336
- 95074e1: Fix linting (rspwarnaarUT) #336
- ee09a34: Implement test for respiratory rate detection (rspwarnaarUT) #336
- 7a83cf7: Implement quality assessment for respiratory rate evaluation (rspwarnaarUT) #336
- 89e3c1d: Quality assessment for local high baseline (rspwarnaarUT) #336
- 4ac2db0: Quality assessment extreme time product check (rspwarnaarUT) #336
- c33b975: Fix linting (rspwarnaarUT) #336
- 9bd5187: Amplitude feature (Rob Warnaar) #336
- 0287c78: Fix linting (Rob Warnaar) #336
- 55a3155: Standardise naming conventions (Rob Warnaar) #336
- 42d6d5f: Quality assessment event timing evaluation (rspwarnaarUT) #336
- e753c49: Merge branch 'release200/waveletdenoising' of https://github.com/ReSurfEMG/ReSurfEMG into release200/waveletdenoising (rspwarnaarUT) #336
- fde761d: Fix linting (rspwarnaarUT) #336
- 9adced8: Restructure and clean filtering module (rspwarnaarUT) #336
- 938249c: Implement quick_look pipeline (excluding test) (rspwarnaarUT) #336
- 96e303b: Updated quick_look notebook (rspwarnaarUT) #336
- bc64559: Fix conversion to scalar warning in filtering (rspwarnaarUT) #336
- a641cec: WIP Sanitize synthetic EMG (rspwarnaarUT) #350
- c3e9f66: WIP Split simulation functions (Rob Warnaar) #350
- 60eaa28: Clean out synthetic EMG and ventilator data functions (Rob Warnaar) #350
- 3712673: WIP fix CLI (Rob Warnaar) #350
- 22d6482: Fix CLI (Rob Warnaar) #350
- f4ab867: Fix tests (Rob Warnaar) #350
- 1166057: Add new EMG quality assessment to data_classes (rspwarnaarUT) #350
- 10a8d4b: Split dataclasses in smaller helperfunction files (rspwarnaarUT) #350
- cabd008: Add new functions to data_class (rspwarnaarUT) #350
- dc5bb35: Fix data_class tests (rspwarnaarUT) #350
- 6fb9ce0: Add wavelet denoising to data_class (rspwarnaarUT) #350
- 96c80fd: Make clean basicemgpipeline and annotated one (rspwarnaarUT) #350
- acd7abf: Move config to data_connector (rspwarnaarUT) #350
- f835c3c: Update config paths (rspwarnaarUT) #350
- ea0bf5b: Rename synthetic ECG maker to EMG maker (rspwarnaarUT) #350
- a8ac26d: WIP Fix config folder depth independency (rspwarnaarUT) #350
- c53d734: Make Config work independent of directory depth (Rob Warnaar) #350
- c152cee: Clean and refactor CLI (Rob Warnaar) #350
- 17f2e2e: Fix CLI (Rob Warnaar) #350
- f789dbe: Update documentation CLI and config (Rob Warnaar) #350
- 9ee7226: Standardise naming of sampling rate (Rob Warnaar) #350
- b6e81f8: Number of samples per second to sampling rate (Rob Warnaar) #350
- 408c217: Update data_classes documentation (Rob Warnaar) #350
- b192623: Fix file_discovery documentation (Rob Warnaar) #350
- c89a1a4: Update peakset documentation (Rob Warnaar) #350
- 7483697: Update synthetic data documentation (Rob Warnaar) #350
- 6fa17a6: TMSIsdk_lite update documentation (Rob Warnaar) #350
- ff90113: Fix dataclassesquality_assesment docs (Rob Warnaar) #350
- 80b4233: Fix docs math_operations (Rob Warnaar) #350
- 09a27c9: Update visualization docs (Rob Warnaar) #350
- ae6f41b: Fix pipelines docs (Rob Warnaar) #350
- 009765d: Eliminate in dict.keys() (Rob Warnaar) #350
- 73217ec: Update preprocessing docs (Rob Warnaar) #350
- 2f50393: Update docs for preprocessing submodule (Rob Warnaar) #350
- ec611c2: Standardize return formatting (Rob Warnaar) #350
- 5557a92: Update changelog (Rob Warnaar) #350
- 093022e: Fix fs_nq error in filtering (Rob Warnaar) #350
- 8b24e06: Add Farnaz as author (Rob Warnaar) #350
- a602f11: Update readme, notebook guide. Remove redundant notebooks (Rob Warnaar) #350
- 432fc3d: Auto generate rst documentation (Rob Warnaar) #350
- b19346a: Fix Sphinx DOC (Rob Warnaar) #351
- a56b4e3: Test Sphinx DOC when making PR to main (Rob Warnaar) #351
- 3e9ee5f: Fix test-sphinx (Rob Warnaar) #351
- 7dcb4cd: Fix Test_Sphinx (Rob Warnaar) #351
- 645334e: Fix Test-Sphinx try 3 (Rob Warnaar) #351
- f6c10c2: Fix Test-Sphinx on push to PR (Rob Warnaar) #351
- c884728: WIP Fix Test-Sphinx (Rob Warnaar) #351
- f1abdd5: WIP Test-Sphinx (Rob Warnaar) #351
- 44e19a9: WIP Test-Sphinx (Rob Warnaar) #351
- ed87dea: Fix deployability tests (Rob Warnaar) #351
- bd2898b: Fix Deployability tests (Rob Warnaar) #351
- 3f8d181: WIP PR to main tests (Rob Warnaar) #351
- 37e1a2c: Fix documentation for Sphinx (Rob Warnaar) #351
- 9f62859: Add 'ipywidgets' to docs dependencies (Rob Warnaar) #351
- 0aac22c: Update Github actions to most recent (Rob Warnaar) #351
- b7f523c: Add confidence interval functions for RMS and ARV calculations in EMG preprocessing (Rob Warnaar) #353
- 61a06b2: Refactor confidence interval calculations in envelopeerrorbars notebook (Rob Warnaar) #353
- d9cf6a2: Refactor data_classes (rspwarnaarUT) #353
- 7adf3bc: Elimitate redundancy in data processing functions (rspwarnaarUT) #353
- d7eb155: Refactor data_classes to be more compact (rspwarnaarUT) #353
- 968c7ab: Update config to provide feedback for get_directory (rspwarnaarUT) #353
- 9174067: Refactor annotated basic pipeline (rspwarnaarUT) #353
- c9b2906: Fix config errors (rspwarnaarUT) #353
- 86fdc37: Fix margins = 0 in TimeSeries.plotpeaks (rspwarnaarUT) #353
- 781ee6b: Fix sphinx docs (rspwarnaarUT) #353
- 38d1119: Add env confidence intervals to dataclass (rspwarnaarUT) #353
- a250ff7: Compact TimeSeriesGroup plot functions (rspwarnaarUT) #353
- 215623f: Update software and annoated basic emg pipelines (rspwarnaarUT) #353
- 3f6f5f2: Update docs to support up to python 3.12 (rspwarnaarUT) #353
- 803f9ea: Minor bug fixes, update default window_length for envelope to 250 ms (rspwarnaarUT) #353
- e5f50fa: Fix config to not overwrite existing config files (rspwarnaarUT) #353
- 227308e: Update notebooks to paper versions (rspwarnaarUT) #353
- 4004235: changed ecg peak detection to 95-5 percentile (ElineOppersma) #354
- 97858bf: changed peak_fraction to 0.4 (ElineOppersma) #354
- 8877ac8: Fix config to generate ./not_pushed if auto-generating config file (rspwarnaarUT) #352
- 705f936: Merge branch 'main' into release100/enverror_bars (rspwarnaarUT) #353
- 34c2738: updated git actions (ElineOppersma) #355
Scientific Software - Peer-reviewed
- Jupyter Notebook
Published by ReSurfEMG about 1 year ago
ReSurfEMG - v0.3.0
Commits
- 1e954f9: Fix normalisation to PEEP 9 (WarnaarRSP) #292
- 4390582: baseline functions in separate script (ElineOppersma) #293
- 2fc2a75: fix linting (ElineOppersma) #293
- 76aa050: fix inting (ElineOppersma) #293
- ba86b20: change packages and lint (ElineOppersma) #293
- de3c6df: Convert setup.py build to pyproject.toml (Rob Warnaar) #293
- 3686d8f: Linting fix (Rob Warnaar) #293
- 94b9392: Delete setup_old.py (rspwarnaarUT) #293
- d7a9e06: Introduce py3.10 (Rob Warnaar) #293
- 81162bd: Minor fixes in package build (WarnaarRSP) #293
- e2cf80b: Add build to pip install (WarnaarRSP) #295
- 26659c1: Fix readme format (WarnaarRSP) #296
- 5a53826: detect peak, start and end of breath in envelope signal, and added testing for 3 functions in module baseline (ElineOppersma) #298
- c96a9f6: Expand readme instruction on testing (WarnaarRSP) #297
- 8dc3b21: Update venv activation on windows (WarnaarRSP) #297
- e728e95: Bug fixes, sanitize newly introduced functions and tests (WarnaarRSP) #298
- 7e9ed34: """ (WarnaarRSP) #302
- c48370d: Restructure on- and offset detection functions (WarnaarRSP) #302
- 7aa9713: On- offset detection based on slope extrapolation (WarnaarRSP) #302
- 6ba5bad: detect peak, start and end of breath in envelope signal, and added testing for 3 functions in module baseline (ElineOppersma) #298
- fd24746: Bug fixes, sanitize newly introduced functions and tests (WarnaarRSP) #298
- a304c76: Remove "old_environment.yml" (WarnaarRSP) #301
- 446f849: WIP Relax requirements py310 (WarnaarRSP) #301
- 976ccf0: Fix badendcutter warnings (WarnaarRSP) #301
- 314d2fe: Fix ConvergenceWarning: FastICA did not converge for testcomputeICAtwocomp_multi (WarnaarRSP) #301
- b420a50: Tested up to python 3.11 (WarnaarRSP) #301
- ed8cb23: Conda env python 3.9-3.11 (WarnaarRSP) #301
- f8521bd: Fix included files in sdist (WarnaarRSP) #301
- 2484d83: Python 3.9 is also supported (WarnaarRSP) #301
- a2d71a1: Fix versioning from automated version detection (WarnaarRSP) #301
- 3edf717: Add tests (WarnaarRSP) #302
- 4f85a05: Merge branch 'main' into WarnaarRSP/slope_extrapolate (rspwarnaarUT) #302
- 218ef6e: Fix sphinx apidoc (#303) (rspwarnaarUT) #303
- 6a92dd0: Fix indentation in event_detection.py (WarnaarRSP) #304
Scientific Software - Peer-reviewed
- Jupyter Notebook
Published by ReSurfEMG over 1 year ago
ReSurfEMG - v0.2.0
Commits
- 9598f15: moved cli to .cli/cli (ElineOppersma) #268
- 246f670: restructure data connector folder (ElineOppersma) #272
- d213532: change converter test (ElineOppersma) #272
- e5c9bfe: modify test naming convention in setup.py (WarnaarRSP) #272
- d84c942: Fix dependencies of multileadtype on data_connector (WarnaarRSP) #272
- 58e2611: Restructure repo: config.py to config/config.py + tests (WarnaarRSP) #274
- 4e1b215: restructure preprocessing folder (ElineOppersma) #273
- b1a0926: minor text details fixed (ElineOppersma) #273
- 962456f: More linting issues solved (ElineOppersma) #273
- f8bd919: more linting (ElineOppersma) #273
- 2d486e1: linting fix (ElineOppersma) #273
- e27a33c: linting issues (ElineOppersma) #273
- 8d426d6: fix sanity check (ElineOppersma) #273
- 4040795: change import locations multileadtype (ElineOppersma) #273
- c21eb91: sanity fix (ElineOppersma) #273
- be120b5: fix tests (ElineOppersma) #273
- bc92e96: Restructure helper_functions into visualisation functions (WarnaarRSP) #277
- f376bc5: Linting fix (WarnaarRSP) #277
- de81aea: update changelog on release v0.1.3 (Candace Makeda Moore, MD) #276
- e92b8aa: Postprocessing folder and features file (FarSoleimani) #270
- 41129ef: split features.py and tests from hf (FarSoleimani) #270
- a360743: Changes to test and features_test (FarSoleimani) #270
- a47b1ba: fixed linting (FarSoleimani) #270
- a892fc0: fixed linting again (FarSoleimani) #270
- fe95ee1: changed features and postprocessing_test (FarSoleimani) #270
- 0c56f51: Fixed linting (FarSoleimani) #270
- 922aab7: changes for paper (Candace Makeda Moore, MD) #280
- e84768f: paper changes 2 cities (Candace Makeda Moore, MD) #280
- ccdfc0c: change helper functions split and rename legacy (ElineOppersma) #279
- 9d82f4a: adapted according to review and cleaned test (ElineOppersma) #279
- 41f3559: delete cli file as it is in cli folder (ElineOppersma) #281
- b14dd3c: Update imports in cli.cli to refer to new structure (WarnaarRSP) #281
- 0d2b52e: restructure ml to folder machine learning (ElineOppersma) #282
- e2b4046: fix linting error (ElineOppersma) #282
- d2f4dee: change readme for new structure of helper function (ElineOppersma) #284
- 178331b: restructure multileadtype and remove big test file (ElineOppersma) #283
- e4fa148: fix lint and sfinx (ElineOppersma) #283
- 54eaade: Comment out all moved functions in helperfunctionslegacy (WarnaarRSP) #283
- bcc9af5: move last function from helperfunctionslegacy (ElineOppersma) #283
- e2294b4: fix lint (ElineOppersma) #283
- 113c665: fix lint (ElineOppersma) #283
- 96fced3: fix sanity issues (ElineOppersma) #283
- 4fb59ba: remove legacy helper_functions (ElineOppersma) #283
- ad2c561: add requested function to pipeline module (ElineOppersma) #283
- 8fc8739: minor typo correction (ElineOppersma) #283
- ce7d7fe: Warnaar rsp/nmc paper (#285) (rspwarnaarUT) #285
- 17a3597: Changelog for library refactoring (WarnaarRSP) #286
- 57e8606: Incorporate changelog of main (WarnaarRSP) #286
- c399601: Merge branch 'main' into dev (rspwarnaarUT) #286
- cc1037e: Fix linting error (WarnaarRSP) #287
- 2fe2ac8: More linting issues (WarnaarRSP) #288
- 7cedfbd: Remove trailing whitespace (WarnaarRSP) #288
- 2cecaca: Dev (#289) (rspwarnaarUT) #289
- 2ec0496: patched setup and on-tag (Candace Moore) #290
Scientific Software - Peer-reviewed
- Jupyter Notebook
Published by ReSurfEMG almost 2 years ago
ReSurfEMG - v0.1.3
Commits
- 73d3619: release 0.1.2 (Candace Makeda Moore, MD) #258
- bceff91: changed getting ready notebook (Walter Baccinelli) #259
- 013d8ec: retool developer instrucitons (Candace Makeda Moore, MD) #260
- f769645: [cr] Reworded paragraph about developers roles (wvxvw) #260
- 12061b0: clarify install_dev further (Candace Makeda Moore, MD) #260
- 36876d6: reword O (Candace Makeda Moore, MD) #260
- 69c8d6d: bib update (Candace Makeda Moore, MD) #265
- 91d025f: bib update (Candace Makeda Moore, MD) #265
- 8f2e525: Suggested types/fix-ups for JOSS paper (AJQuinn) #266
- d7614a7: [fix] Conda no longer tolerates single equals in package version format (wvxvw) #275
Scientific Software - Peer-reviewed
- Jupyter Notebook
Published by ReSurfEMG about 2 years ago
ReSurfEMG - v0.0.10
Commits
- f78257e: update changelog (Candace Makeda Moore, MD) #244
- 2ec1449: update changelog (Candace Makeda Moore, MD) #244
- 45a91d0: up to python 3.9 everywhere (Candace Makeda Moore, MD) #245
- ffabaaf: change docker to 3.9 on file (Candace Makeda Moore, MD) #245
- ccea0f1: fast update instructions (Candace Makeda Moore, MD) #246
- 15df43d: Upgrade environment.yml to Python 3.9 (wvxvw) #246
- 5275c14: checking array and other factors in new mne (Candace Makeda Moore, MD) #246
- ac1b797: update changelog and new-old environment file (Candace Makeda Moore, MD) #246
- 5f2e444: paper changed as JOSS reviewers suggested (ElineOppersma) #247
- fdac9fb: fixing for next version to be 39 (Candace Makeda Moore, MD) #248
- 7a99f73: add readme details (Candace Makeda Moore, MD) #248
- 9f0742c: correct path for venv activation (Walter Baccinelli) #249
- a09cb40: fix mamba hyperlink, cosmetic (Candace Makeda Moore, MD) #249
- 267389a: simplified (Candace Makeda Moore, MD) #249
- ccc59de: update readme for clarity (Candace Makeda Moore, MD) #249
- 3afb6c0: start multiplatform install instructions (Candace Makeda Moore, MD) #253
- 2bd289a: add etc folder and more test (Candace Makeda Moore, MD) #253
- 8de17a0: redo internal link (Candace Makeda Moore, MD) #253
- aa24447: try hyphen for getting-started (Candace Makeda Moore, MD) #253
- 0387c41: nonconda (Candace Makeda Moore, MD) #253
- 7274f8f: try manual (Candace Makeda Moore, MD) #253
- 703503c: final getting started link try (Candace Makeda Moore, MD) #253
- 547b27a: Instructions for installing using pip / on Linux (wvxvw) #253
- a0d0d10: perfection (Candace Makeda Moore, MD) #253
- bc500ad: Walter corrections (Candace Makeda Moore, MD) #253
- 57e5fe3: using double quotation in json (Walter Baccinelli) #250
- 42ce952: notebook for getting started (Walter Baccinelli) #250
- 7231ac5: removing config from cli (Walter Baccinelli) #250
- 36aaf8d: usig synthetic data and multiple extensions (Walter Baccinelli) #250
- 3606c77: added synthetic emg data (Walter Baccinelli) #250
- 2740958: added testing and new notebook to readme file (Walter Baccinelli) #250
- 7059cd3: Revert "removing config from cli" (Walter Baccinelli) #250
- e667a85: use config if paths are empty (Walter Baccinelli) #250
- 55a7ebc: update environment with tkinter (Candace Makeda Moore, MD) #250
- eea0099: fixed extension search and use of path.join (Walter Baccinelli) #250
- 41723a7: more elegant solution (Walter Baccinelli) #250
- 6aafb46: update changelog (Candace Makeda Moore, MD) #254
- e471b96: get rid off egg (Candace Makeda Moore, MD) #254
- f850c37: reupdate change log to v0.1.1 (Candace Makeda Moore, MD) #256
- 6ef7174: oleg suggestions (Candace Makeda Moore, MD) #257
- 24ebebc: fix changelog (Candace Makeda Moore, MD) #257
- 73d3619: release 0.1.2 (Candace Makeda Moore, MD) #258
- bceff91: changed getting ready notebook (Walter Baccinelli) #259
- 013d8ec: retool developer instrucitons (Candace Makeda Moore, MD) #260
- f769645: [cr] Reworded paragraph about developers roles (wvxvw) #260
- 12061b0: clarify install_dev further (Candace Makeda Moore, MD) #260
- 36876d6: reword O (Candace Makeda Moore, MD) #260
- 69c8d6d: bib update (Candace Makeda Moore, MD) #265
- 91d025f: bib update (Candace Makeda Moore, MD) #265
- 8f2e525: Suggested types/fix-ups for JOSS paper (AJQuinn) #266
- 4de4081: [fix] Conda no longer tolerates single equals in package version format (wvxvw)
Scientific Software - Peer-reviewed
- Jupyter Notebook
Published by ReSurfEMG about 2 years ago
ReSurfEMG - v0.1.0
Commits
- f78257e: update changelog (Candace Makeda Moore, MD) #244
- 2ec1449: update changelog (Candace Makeda Moore, MD) #244
- 45a91d0: up to python 3.9 everywhere (Candace Makeda Moore, MD) #245
- ffabaaf: change docker to 3.9 on file (Candace Makeda Moore, MD) #245
- ccea0f1: fast update instructions (Candace Makeda Moore, MD) #246
- 15df43d: Upgrade environment.yml to Python 3.9 (wvxvw) #246
- 5275c14: checking array and other factors in new mne (Candace Makeda Moore, MD) #246
- ac1b797: update changelog and new-old environment file (Candace Makeda Moore, MD) #246
- 5f2e444: paper changed as JOSS reviewers suggested (ElineOppersma) #247
- fdac9fb: fixing for next version to be 39 (Candace Makeda Moore, MD) #248
- 7a99f73: add readme details (Candace Makeda Moore, MD) #248
- 9f0742c: correct path for venv activation (Walter Baccinelli) #249
- a09cb40: fix mamba hyperlink, cosmetic (Candace Makeda Moore, MD) #249
- 267389a: simplified (Candace Makeda Moore, MD) #249
- ccc59de: update readme for clarity (Candace Makeda Moore, MD) #249
- 3afb6c0: start multiplatform install instructions (Candace Makeda Moore, MD) #253
- 2bd289a: add etc folder and more test (Candace Makeda Moore, MD) #253
- 8de17a0: redo internal link (Candace Makeda Moore, MD) #253
- aa24447: try hyphen for getting-started (Candace Makeda Moore, MD) #253
- 0387c41: nonconda (Candace Makeda Moore, MD) #253
- 7274f8f: try manual (Candace Makeda Moore, MD) #253
- 703503c: final getting started link try (Candace Makeda Moore, MD) #253
- 547b27a: Instructions for installing using pip / on Linux (wvxvw) #253
- a0d0d10: perfection (Candace Makeda Moore, MD) #253
- bc500ad: Walter corrections (Candace Makeda Moore, MD) #253
- 57e5fe3: using double quotation in json (Walter Baccinelli) #250
- 42ce952: notebook for getting started (Walter Baccinelli) #250
- 7231ac5: removing config from cli (Walter Baccinelli) #250
- 36aaf8d: usig synthetic data and multiple extensions (Walter Baccinelli) #250
- 3606c77: added synthetic emg data (Walter Baccinelli) #250
- 2740958: added testing and new notebook to readme file (Walter Baccinelli) #250
- 7059cd3: Revert "removing config from cli" (Walter Baccinelli) #250
- e667a85: use config if paths are empty (Walter Baccinelli) #250
- 55a7ebc: update environment with tkinter (Candace Makeda Moore, MD) #250
- eea0099: fixed extension search and use of path.join (Walter Baccinelli) #250
- 41723a7: more elegant solution (Walter Baccinelli) #250
- 6aafb46: update changelog (Candace Makeda Moore, MD) #254
- e471b96: get rid off egg (Candace Makeda Moore, MD) #254
- f850c37: reupdate change log to v0.1.1 (Candace Makeda Moore, MD) #256
- 6ef7174: oleg suggestions (Candace Makeda Moore, MD) #257
- 24ebebc: fix changelog (Candace Makeda Moore, MD) #257
Scientific Software - Peer-reviewed
- Jupyter Notebook
Published by ReSurfEMG over 2 years ago
ReSurfEMG - v0.0.9
Commits
- 57b0ebc: update changelog, delete old enviros (Candace Makeda Moore, MD)
- ed317e9: make example json (Candace Makeda Moore, MD)
- 32c6eb7: improve finding peak (Candace Makeda Moore, MD) #216
- 21abb0c: Update resurfemg/helper_functions.py (Candace Makeda Moore, MD) #216
- fbf28de: peak function improve with abs array use (Candace Makeda Moore, MD) #216
- 7120480: remove junk notebook (Candace Makeda Moore, MD) #216
- 0d06967: fixing sphinx (Candace Makeda Moore, MD)
- f214fcf: fix lint (Candace Makeda Moore, MD)
- e45f55c: ivar space2 (Candace Makeda Moore, MD)
- a7288fb: retab (Candace Makeda Moore, MD)
- 6946b11: comment solution (Candace Makeda Moore, MD)
- b20ca4b: pull comment entirely (Candace Makeda Moore, MD)
- 9fc207f: reset docu (Candace Makeda Moore, MD)
- ac8e9cf: lintable (Candace Makeda Moore, MD)
- 07b33f1: add option to smooth or not before slope calculation (Candace Makeda Moore, MD) #217
- c9468c5: [fix] Documentation (indentation error) (Oleg Sivokon)
- 34c28d3: spelling again (Candace Makeda Moore, MD)
- 7f2feff: add real entropy function (Candace Makeda Moore, MD) #222
- a8d8486: changelog updating (Candace Makeda Moore, MD) #222
- 8d053f7: improve documentation SHannon entropy (Candace Makeda Moore, MD) #222
- 161a1ea: add test for shannon entropy (Candace Makeda Moore, MD) #222
- 9cf0145: Update resurfemg/helper_functions.py (Candace Makeda Moore, MD) #222
- cb4749e: joss modifications (Candace Makeda Moore, MD) #224
- f4b04ea: change biosppy ref (ElineOppersma) #226
- 281a8b3: add variability function (Candace Makeda Moore, MD) #225
- 54c56a2: add testing for variability maker (Candace Makeda Moore, MD) #225
- ef7303d: Update resurfemg/helper_functions.py (Candace Makeda Moore, MD) #225
- bd8d7f0: linting (Candace Makeda Moore, MD) #225
- 7dd42a2: add walter suggestion and notebook (Candace Makeda Moore, MD) #225
- cea2e27: parameterize end-fill method (Candace Makeda Moore, MD) #225
- e2ef669: add vari_notebook (Candace Makeda Moore, MD) #228
- 7b1161e: run sphinx on branch (Candace Makeda Moore, MD) #228
- 58c34a6: correct formatting docu (Candace Makeda Moore, MD) #228
- 22db15c: lint sphinx fix (Candace Makeda Moore, MD) #228
- dc149bf: converter function doc upgrade (Candace Makeda Moore, MD) #229
- 303234b: change update changelog (Candace Makeda Moore, MD) #231
- 6bc022f: add csv to numpy file maker in cli (Candace Makeda Moore, MD) #231
- c706576: Update resurfemg/converter_functions.py (Candace Makeda Moore, MD) #231
- 7665e8b: unwrite suggestion (Candace Makeda Moore, MD) #231
- 24e1f94: fixes to readme and changelog (Candace Makeda Moore, MD) #233
- 1b867e3: clarifying notes (Candace Makeda Moore, MD) #233
- e899d69: update contributing (Candace Makeda Moore, MD) #234
- 0a5b88b: update notebook guide (ElineOppersma) #235
- 8fd53b3: changes notebook guide (ElineOppersma) #235
- f7427a6: update notebook guide (ElineOppersma) #235
- 14f842e: spelling check (ElineOppersma) #235
- 2049704: enough for dashboard (Candace Makeda Moore, MD) #236
- 66758fe: sphinx fix (Candace Makeda Moore, MD) #238
- af9afe9: push back (Candace Makeda Moore, MD) #238
- cbd0c66: another sphinx fix (Candace Makeda Moore, MD) #239
- bab7f78: final_opti sampen (Candace Makeda Moore, MD) #240
- e2a604c: lint previous (Candace Makeda Moore, MD) #240
- 07e2998: minor fixes, reset dims to 1 (Candace Makeda Moore, MD) #240
- 12e435c: fix log (Candace Makeda Moore, MD) #240
- f878441: matrix upgrade and clean out workshop yml (Candace Makeda Moore, MD) #241
- 614fc11: update changelog (Candace Makeda Moore, MD) #241
- e7df80b: Adopt former Sphinx setuptools integration (Oleg Sivokon) #242
- b8f7da9: try spinx on branch (Candace Makeda Moore, MD) #243
- bc5e9f0: note on data (Candace Makeda Moore, MD) #243
Scientific Software - Peer-reviewed
- Jupyter Notebook
Published by ReSurfEMG over 2 years ago
ReSurfEMG - v0.0.8
Commits
- 80c5103: change changelog to reality (Candace Makeda Moore, MD)
- 8ec17d7: JOSS revision Eline (ElineOppersma)
- c4a54ba: spellcheck documentation (ElineOppersma)
- 52bb5ac: redo grammar and style (Candace Makeda Moore, MD)
- 96b2319: different smoothing in times (Candace Makeda Moore, MD) #209
- 51480e5: lintit (Candace Makeda Moore, MD) #209
- 19129ac: Update resurfemg/helper_functions.py (Candace Makeda Moore, MD) #209
- 9370af8: slope function and test (Candace Makeda Moore, MD) #211
- d4e28e6: updates for version 8 (Candace Makeda Moore, MD)
- a9c3055: workshop environment and notebooks (Candace Makeda Moore, MD)
- 3d3609c: [fix] Freezed mne package version to less than 1.3.0 (wvxvw) #212
- 14c9f12: pin mne exactly (Candace Makeda Moore, MD) #212
- 284cfd5: tweaking setup again (Candace Makeda Moore, MD) #212
- cc71bd8: lint setup, workshop + pycodestyle (Candace Makeda Moore, MD) #212
- 3c03e8b: Formatting (wvxvw) #212
- c982d5f: readme note python 3.8 (Candace Makeda Moore, MD)
- 0fb8c79: update readme (Candace Makeda Moore, MD)
- badb017: update changelog (Candace Makeda Moore, MD)
- ec136e6: Added developer instructions (wvxvw) #213
- 58f6736: add linux developer instructions to readme (Candace Makeda Moore, MD)
- 90f2d79: update gitignore (Candace Makeda Moore, MD)
- 5551128: change change-log (Candace Makeda Moore, MD)
- e2f5aa1: Fix release job (wvxvw) #214
Scientific Software - Peer-reviewed
- Jupyter Notebook
Published by ReSurfEMG almost 3 years ago
ReSurfEMG - v0.0.7
Commits
- d777a50: upgrade setup conda version in workflow (Candace Makeda Moore, MD)
- bab4f1a: times to peak tuple function (Candace Makeda Moore, MD) #208
- dacc80e: update changelog for version 7 (Candace Makeda Moore, MD)
Scientific Software - Peer-reviewed
- Jupyter Notebook
Published by ReSurfEMG almost 3 years ago
ReSurfEMG - v0.0.5
Commits
- b94a664: fix citation1 (Candace Makeda Moore, MD)
- 3ab6c22: new multi-lead ICA (Candace Makeda Moore, MD)
- 0f8dc08: lint (Candace Makeda Moore, MD)
- 481ee43: tests for new computeICAcomps (Candace Makeda Moore, MD)
- 80b7edf: take graphs off (Candace Makeda Moore, MD)
- b04be9f: delete copy (Candace Makeda Moore, MD)
- b41ee4d: roll Jonkman (Candace Makeda Moore, MD)
- 2887751: Pub notebook: Reselecting window without re-run (WarnaarRSP) #95
- 17d1194: vent rate viz (Candace Makeda Moore, MD)
- fa4da73: file vent rates (Candace Makeda Moore, MD)
- 978feb5: multi-fit (Candace Makeda Moore, MD)
- eae2448: time matching (Candace Makeda Moore, MD)
- fe87170: csv jkmn reader (Candace Makeda Moore, MD)
- f4a802f: new csv converter (Candace Makeda Moore, MD)
- 7678b03: dissapear graph (Candace Makeda Moore, MD)
- 1f6c4aa: selectible ICA (Candace Makeda Moore, MD)
- c8bfeb2: improved selecti (Candace Makeda Moore, MD)
- b03b958: multi doc, more converter (Candace Makeda Moore, MD)
- 6226653: update medical proff (Candace Makeda Moore, MD)
- b98a25b: further update medical pro docu (Candace Makeda Moore, MD)
- 8966afb: config done (Candace Makeda Moore, MD)
- 16d07a7: documentation on config (Candace Makeda Moore, MD)
- d3cffd2: try again (Candace Makeda Moore, MD)
- 56c0ad9: fix config (Candace Makeda Moore, MD)
- fb4ec4e: testy (Candace Makeda Moore, MD)
- 6f044d5: rooting out problem (Candace Makeda Moore, MD)
- 1e4131a: notebook mess (Candace Makeda Moore, MD)
- dfcd159: notebook wrangle over json (Candace Makeda Moore, MD)
- 3302cf6: restore confidnotebook (Candace Makeda Moore, MD)
- be1c4cb: update docu (Candace Makeda Moore, MD)
- 7e391ee: Revert "update docu" (Candace Makeda Moore, MD)
- 2326b76: update config docu (Candace Makeda Moore, MD)
- db3f642: fixing paths (Candace Makeda Moore, MD)
- b69750e: cleaning open_work (Candace Makeda Moore, MD)
- 0566b52: top docu (Candace Makeda Moore, MD)
- fd3061b: cleaning notebooks (Candace Makeda Moore, MD)
- 5f1d40b: cleaning notebooks2 (Candace Makeda Moore, MD)
- 7d908c2: lint and notebook cleaning (Candace Makeda Moore, MD)
- 5f58864: clarify readme (Candace Makeda Moore, MD)
- da770e6: update ml snippet maker (Candace Makeda Moore, MD)
- 09d46bf: repath new top curve and ML_EMG1 (Candace Makeda Moore, MD)
- 35e0f05: outer widgets (Candace Makeda Moore, MD)
- bc103db: fix entropy notebook paths (Candace Makeda Moore, MD)
- c7cfb16: final cleaning paths (Candace Makeda Moore, MD)
- c69f561: push back historical (Candace Makeda Moore, MD)
- da26994: new dvrmn (Candace Makeda Moore, MD)
- 39b8e51: new dvrmn (Candace Makeda Moore, MD)
- 01c84f9: nme move plus docu multi update (Candace Makeda Moore, MD)
- 79f7db8: lint converter functions (Candace Makeda Moore, MD)
- 4a2ca2f: redo multi-lead funct (Candace Makeda Moore, MD)
- fdc0c35: tuple list (Candace Makeda Moore, MD)
- d04e5e7: fix docu multilead (Candace Makeda Moore, MD)
- f610957: create time csv, add notebooks_guide (Candace Makeda Moore, MD)
- ed9534d: more notebooks (Candace Makeda Moore, MD)
- 00585a2: update notebooks guide (Candace Makeda Moore, MD)
- a272476: add multi-pipeline correctly (Candace Makeda Moore, MD)
- d79f792: try sys iport for hf (Candace Makeda Moore, MD)
- 93f44be: importing helper functions functions (Candace Makeda Moore, MD)
- d4fa50d: retry importing hf (Candace Makeda Moore, MD)
- fdc4cae: correct imports (Candace Makeda Moore, MD)
- e4e9efc: documentation upgrade (Candace Makeda Moore, MD)
- 773047d: testing n-array (Candace Makeda Moore, MD)
- 47986aa: fix n_array check notebook (Candace Makeda Moore, MD)
- fadfd25: hf.hi_envelope docu upgrade (Candace Makeda Moore, MD)
- b57a08d: upgrade notebooks_guide (Candace Makeda Moore, MD)
- dafdcf9: notebook_guide experiment (Candace Makeda Moore, MD)
- d94ea2d: reformat md notebook_guide (Candace Makeda Moore, MD)
- 98851d0: md on guide (Candace Makeda Moore, MD)
- 6115d3b: fix guide markdown (Candace Makeda Moore, MD)
- decf3d0: reformat md notebook_guide again (Candace Makeda Moore, MD)
- 8b31eaf: md on guide improve (Candace Makeda Moore, MD)
- 6aa61f4: reformat md notebook_guide again2 (Candace Makeda Moore, MD)
- 4561c16: reformat md notebook_guide again3 (Candace Makeda Moore, MD)
- 362498b: md on guide improve4 (Candace Makeda Moore, MD)
- 26d8d8b: try adding emojis (Candace Makeda Moore, MD)
- cad8d9d: rainbow (Candace Makeda Moore, MD)
- 781c363: update library imports (Candace Makeda Moore, MD)
- eeb9cd2: add fair software (Candace Makeda Moore, MD)
- 25120c4: software practices bage (Candace Makeda Moore, MD)
- 202e5af: fair badge (Candace Makeda Moore, MD)
- 5f734c1: switch contact (Candace Makeda Moore, MD)
- 97a8dc4: workflow test, move hash function (Candace Makeda Moore, MD)
- 6b44dfe: simplify workflow,fix tests (Candace Makeda Moore, MD)
- 44f3b2a: add synthetic data function to config (Candace Makeda Moore, MD)
- af27f5a: lint fix commit (Candace Makeda Moore, MD)
- b661c61: update notebooks (Candace Makeda Moore, MD)
- ffccc8d: update notebooks a bit more (Candace Makeda Moore, MD)
- e76d223: pull out copy notebook (Candace Makeda Moore, MD)
- bd3b9f0: new notebook link org (Candace Makeda Moore, MD)
- 6d63fe8: retry direct links notebooks (Candace Makeda Moore, MD)
- 6067437: Revert "retry direct links notebooks" (Candace Makeda Moore, MD)
- 0a2b3af: hole (Candace Makeda Moore, MD)
- 0485a65: bettering notebook layout' (Candace Makeda Moore, MD)
- 324ae95: playing (Candace Makeda Moore, MD)
- be18e64: stacked (Candace Makeda Moore, MD)
- 3d89cc4: entropy some to notebook (Candace Makeda Moore, MD)
- c846126: fix duplicated gating example (Candace Makeda Moore, MD)
- 330b1a7: more to notebook guide (Candace Makeda Moore, MD)
- 16eafac: delete duplicate (Candace Makeda Moore, MD)
- cae43aa: array time matching (Candace Makeda Moore, MD)
- aa9f35e: changed auc based on real EMG (ElineOppersma) #116
- 956cb94: comment our dead cell (Candace Makeda Moore, MD) #116
- 1020cac: Hard coded paths to Config paths (WarnaarRSP) #117
- 47929b9: Index Poly5Reader.samples instead of Poly5Reader object (ElineOppersma) #118
- 708dd30: update pre-ml pipeline (Candace Makeda Moore, MD) #120
- b39a190: update tests to pipeline1 (Candace Makeda Moore, MD) #120
- 5ad293b: workingpipelinepre_ml multi update (Candace Makeda Moore, MD) #120
- f3d3d72: lint up only (Candace Makeda Moore, MD) #120
- cc90a6d: pre release adding to changelog (Candace Makeda Moore, MD)
- 0aa3122: complete changelog (Candace Makeda Moore, MD)
Scientific Software - Peer-reviewed
- Jupyter Notebook
Published by ReSurfEMG about 3 years ago
ReSurfEMG - v0.0.4
Commits
- 54bca31: clean out comments (C. Moore)
- b04e3f9: Instructions on how to get test data (wvxvw) #50
- 9beb23f: WIP QRS gating functions (WarnaarRSP) #53
- 15e4240: Update readme (WarnaarRSP) #53
- 2e61dba: Revert "WIP QRS gating functions" (WarnaarRSP) #53
- 0f0d7f9: Fix readme (WarnaarRSP) #53
- d88df6a: clarify readme (C. Moore)
- ab4c91d: switch to dash multipage and bootstrap + static class (Walter Baccinelli) #52
- 8fc6ef2: fixing missing callbacks import (Walter Baccinelli) #52
- 8b0d89f: updated environment (Walter Baccinelli) #52
- 8df3715: badges (C. Moore)
- 49b3b29: WIP QRS gating functions (WarnaarRSP) #56
- dd6f25f: Gating functions working with example notebook (WarnaarRSP) #56
- e229e95: Fix Rolling RMS padding (WarnaarRSP) #56
- 22efaca: Sanitise code step 1 (WarnaarRSP) #56
- f7c761f: WIP Testing functions, bug fix gating functions (WarnaarRSP) #56
- fb82851: Gating example bug fix (WarnaarRSP) #56
- d70e6c7: gating tests implemented, fix out of range in hf (WarnaarRSP) #56
- bd3d531: Delete gating_test.ipynb (rspwarnaarUT) #56
- 0c6b473: linting start (C. Moore) #56
- c6608ad: rob gating but linted (C. Moore) #56
- 6eaea5a: fix docstring for sphinx (C. Moore)
- 51bbb2e: added buttons for data removal (Walter Baccinelli) #57
- b941892: style changed (Walter Baccinelli) #57
- dbe1021: update citation with Rob (C. Moore)
- 96e8b25: changes to power spectrum computation and visualization (Walter Baccinelli) #59
- 2c0043f: take out unneccesary open work, checked power_spect (C. Moore) #59
- acc08a1: added function to pick lowest correlate lead (Walter Baccinelli) #62
- 39fb999: style correction (Walter Baccinelli) #62
- 31abe80: update resurf helper function heartpicker (C. Moore) #62
- 34121ac: update readme (C. Moore)
- 5e4026c: remove dashboard files (Walter Baccinelli) #61
- fa3232c: remove dashboard dependencies (Walter Baccinelli) #61
- c3e0e21: minimal preprocessing pipeline (C. Moore)
- 1a0a776: improved minimal pipeline (C. Moore)
- 14196ca: testing update (C. Moore)
- 7283d1c: further test tamperiong (C. Moore)
- 8e666c4: better test for components-picker (C. Moore)
- 8cddf8b: entropy updating towards (C. Moore)
- 186ea7c: updated_june (C. Moore)
- ea4d313: heart lead seeking (C. Moore)
- 8d8f6c7: entropy progress (C. Moore)
- a096253: eline's notebook (C. Moore)
- 7d9c8ec: untested curve_catcher (C. Moore)
- 2584313: update functions (C. Moore)
- c385fe4: more entropy (C. Moore)
- cab00f8: start pull off old halfway notebooks into .gitignored (C. Moore)
- bc81cd2: git mess (C. Moore)
- 267c0ea: further cleanup (C. Moore)
- 8bd6d09: bad file push (C. Moore)
- 3bc0a74: lag_lead (C. Moore)
- 6eb8cf2: fix gitignore again (C. Moore)
- 5a0bc3a: experiment (C. Moore)
- 5ba2b20: ml_snippeter (C. Moore)
- 0621314: more details for e (C. Moore)
- f246b82: intermediate (C. Moore)
- ac1c962: fix eline on main (C. Moore)
- ba6b974: resolve conflicts (Candace Makeda Moore, MD)
- b96c17e: Gating functions working with example notebook (WarnaarRSP)
- f451e0f: Fix Rolling RMS padding (WarnaarRSP)
- 3533e02: Sanitise code step 1 (WarnaarRSP)
- 80ca7be: resolution (Candace Makeda Moore, MD)
- ba6255d: Gating example bug fix (WarnaarRSP)
- f20d57d: gating tests implemented, fix out of range in hf (WarnaarRSP)
- ac48be5: Delete gating_test.ipynb (rspwarnaarUT)
- 36ca210: lint resolution (Candace Makeda Moore, MD)
- baf6c69: rob gating but linted (C. Moore)
- 32295db: Citation file Rob (WarnaarRSP)
- Indentation error in gating method 3 (WarnaarRSP)
- 3c4200c: NME notebook cleansed (WarnaarRSP)
- be2b1a7: add reviewed (C. Moore)
- 3a23972: further pub notebook (C. Moore)
- 68d8f68: add pre-reading work (C. Moore)
- e51d110: add community_demos (C. Moore)
- 67229f2: fix docu (Candace Makeda Moore, MD)
- 03852e8: ml (Candace Makeda Moore, MD)
- 0b836c4: ignor (Candace Makeda Moore, MD)
- 5ad7d6e: ml up (Candace Makeda Moore, MD)
- 3ab2db2: entropy ml (Candace Makeda Moore, MD)
- e4192d7: fix pandas for ml (Candace Makeda Moore, MD)
- f71429f: power (Candace Makeda Moore, MD)
- 27485f9: push seaborn (Candace Makeda Moore, MD)
- 5b4694d: plus cm (Candace Makeda Moore, MD)
- 89ad73b: entropy doc (Candace Makeda Moore, MD)
- a714243: rereun and think (Candace Makeda Moore, MD)
- 6e66d4f: more docu and lint (Candace Makeda Moore, MD)
- 5ba591f: think (Candace Makeda Moore, MD)
- 52d96c9: group readme (Candace Makeda Moore, MD)
- edf48cb: pull learning binder (Candace Makeda Moore, MD)
- 10e0dd6: jump function (Candace Makeda Moore, MD)
- 104e694: running ml model (Candace Makeda Moore, MD)
- 435c595: ml process 1-10 (Candace Makeda Moore, MD)
- b94ecae: fixing ml app (Candace Makeda Moore, MD)
- 33dff2c: running predictions (Candace Makeda Moore, MD)
- 0509ea5: holy ml (Candace Makeda Moore, MD)
- d400402: lint (Candace Makeda Moore, MD)
- 7e8ea6b: shift predictions (Candace Makeda Moore, MD)
- f8d616c: new funct for preml pipeline (Candace Makeda Moore, MD)
- dd47a52: demo moved (Candace Makeda Moore, MD)
- b725f1c: newtopcurve (Candace Makeda Moore, MD)
- 8a1b296: testing new top smoother (Candace Makeda Moore, MD)
- f4918c0: other smoother option (Candace Makeda Moore, MD)
- 319dd26: working on file reading (Candace Makeda Moore, MD)
- 89188f8: more reading (Candace Makeda Moore, MD)
- f518ab0: add annemijn reader function (Candace Makeda Moore, MD)
- d3beec4: put scipy on env (Candace Makeda Moore, MD)
- b11c9a2: cleaning hf and env (Candace Makeda Moore, MD)
- f1b6b94: changelog added changes for release 0.0.4 (ElineOppersma)
Scientific Software - Peer-reviewed
- Jupyter Notebook
Published by ReSurfEMG over 3 years ago
ReSurfEMG - v0.0.1
Commits
- fdb9447: minor change spelling docs (Mos-Oppersma)
- 5728795: fixed converter_functions name (Walter Baccinelli) #45
- b5850f3: lint setup (C. Moore)
- 5c230f8: Deal with OSX OOM errors when building conda package (wvxvw) #46
- c5bb7dd: update changelog pre-release with Mac (C. Moore)
Scientific Software - Peer-reviewed
- Jupyter Notebook
Published by ReSurfEMG over 3 years ago