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Open Source Science

https://github.com/aidh-ms/openicu

https://github.com/aidh-ms/openicu

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (12.1%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

Basic Info
  • Host: GitHub
  • Owner: aidh-ms
  • License: mit
  • Language: Python
  • Default Branch: main
  • Size: 2.03 MB
Statistics
  • Stars: 6
  • Watchers: 1
  • Forks: 1
  • Open Issues: 5
  • Releases: 0
Created about 1 year ago · Last pushed 6 months ago
Metadata Files
Readme License Code of conduct Citation Codeowners Security

README.md

Coverage Status

Python Project Template

This is a project to unify and extract data from different ICU data sources.

Features

  • TODO

Getting Started

[!NOTE] Use the included dev container to automatically install all the necessary dev tools and dependencies.

  1. Clone the repository: sh git clone https://github.com/Paul-B98/python-project-template.git cd python-project-template

  2. Open the project in Visual Studio Code: sh code .

  3. Reopen in Container:

    • Press F1 to open the command palette.
    • Type Remote-Containers: Reopen in Container and select it.
    • VS Code will build the Docker container defined in the .devcontainer folder and open the project inside the container.

Contributing

Conventional Commits

We follow the Conventional Commits specification to maintain a consistent commit history and enable automated tooling for releases and changelogs.

Commit message format:

``` Commit Message Format

(optional scope):

[optional body]

[optional footer(s)] ```

Common Types

  • feat: A new feature
  • fix: A bug fix
  • docs: Documentation only changes
  • style: Changes that do not affect the meaning of the code (formatting, missing semicolons, etc.)
  • refactor: A code change that neither fixes a bug nor adds a feature
  • perf: A code change that improves performance
  • test: Adding or correcting tests
  • chore: Changes to the build process or auxiliary tools
  • infra: infrastructure ch

Documentation

The following documentation describes the use and architecture of the OpenICU project.

Requirements and architecture documentation

This project uses arc42 to document the requirements and architecture: 1. Introduction and Goals 1. Architecture Constraints 1. Context and Scope 1. Solution Strategy 1. Building Block View 1. Runtime View 1. Deployment view 1. Crosscutting Concepts 1. Architecture Decisions 1. Quality Requirements 1. Risks and Technical Debt 1. Glossary

Owner

  • Name: AIDH MS
  • Login: aidh-ms
  • Kind: organization
  • Email: christian.porschen@ukmuenster.de
  • Location: Germany

Anaesthesiology and Intensive Care Digital Health Münster

Citation (CITATION.cff) 

cff-version: 1.2.0
message: If you use this software, please cite it using these metadata.
title: "OpenICU"
authors:
- family-names: "Brauckmann"
  given-names: "Paul"
  affiliation: Universität Münster
  orcid: "https://orcid.org/0009-0002-8163-0989"
- given-names: Christian
  family-names: Porschen
  email: c_pors01@uni-muenster.de
  affiliation: Universität Münster
  orcid: 'https://orcid.org/0000-0001-5355-4531'
type: software
version: 0.0.1
date-released: 2025-01-01
license: MIT
url: https://github.com/aidh-ms/OpenICU
repository-code: https://github.com/aidh-ms/OpenICU
identifiers:
- type: url
  value: https://github.com/aidh-ms/OpenICU
keywords:
- python library
- icu datasets

GitHub Events

Total
  • Issues event: 51
  • Watch event: 5
  • Delete event: 113
  • Issue comment event: 98
  • Member event: 1
  • Push event: 259
  • Pull request review event: 102
  • Pull request event: 233
  • Create event: 118
Last Year
  • Issues event: 51
  • Watch event: 5
  • Delete event: 113
  • Issue comment event: 98
  • Member event: 1
  • Push event: 259
  • Pull request review event: 102
  • Pull request event: 233
  • Create event: 118

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 31
  • Total pull requests: 133
  • Average time to close issues: 29 days
  • Average time to close pull requests: about 20 hours
  • Total issue authors: 2
  • Total pull request authors: 2
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.53
  • Merged pull requests: 95
  • Bot issues: 0
  • Bot pull requests: 130
Past Year
  • Issues: 31
  • Pull requests: 133
  • Average time to close issues: 29 days
  • Average time to close pull requests: about 20 hours
  • Issue authors: 2
  • Pull request authors: 2
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.53
  • Merged pull requests: 95
  • Bot issues: 0
  • Bot pull requests: 130
View more stats
Top Authors
Issue Authors
  • Paul-B98 (30)
  • prockenschaub (1)
Pull Request Authors
  • dependabot[bot] (130)
  • Paul-B98 (3)
Top Labels
Issue Labels
Pull Request Labels
dependencies (130) python (108) python:uv (20) github_actions (2)

Dependencies

.github/workflows/python_ci.yml actions
  • actions/cache v4 composite
  • actions/checkout v4 composite
  • actions/setup-python v5 composite
.devcontainer/Dockerfile docker
  • mcr.microsoft.com/devcontainers/python 3.13 build
.devcontainer/docker-compose.yml docker
poetry.lock pypi
  • 130 dependencies
pyproject.toml pypi
  • coverage ^7.6.10 develop
  • jupyterlab ^4.3.4 develop
  • mypy ^1.14.0 develop
  • pytest ^8.0.2 develop
  • pytest-asyncio ^0.25.0 develop
  • pytest-cov ^6.0.0 develop
  • pytest-random-order ^1.1.1 develop
  • pytest-recording ^0.13.1 develop
  • ruff ^0.8.4 develop
  • pandas ^2.2.3
  • pandas-stubs ^2.2.3.241126
  • pandera ^0.22.0
  • psycopg ^3.2.3
  • pyarrow ^18.1.0
  • pydantic ^2.10.4
  • python ^3.13
  • pyyaml ^6.0.2
  • sqlalchemy ^2.0.36
  • types-pyyaml ^6.0.12.20241221