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pysicm_analysis

Analysis tool for .sicm files created with our SIC microscope

https://github.com/nanoscopy-rubion/pysicm_analysis

Science Score: 44.0%

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    Found CITATION.cff file
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    .zenodo.json file
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    Scientific vocabulary similarity
    Low similarity (3.9%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

Analysis tool for .sicm files created with our SIC microscope

Basic Info
  • Host: GitHub
  • Owner: nanoscopy-RUBION
  • License: mit
  • Language: Python
  • Default Branch: main
  • Homepage:
  • Size: 1020 KB
Statistics
  • Stars: 0
  • Watchers: 0
  • Forks: 0
  • Open Issues: 24
  • Releases: 2
Created over 3 years ago · Last pushed over 1 year ago
Metadata Files
Readme License Citation

README.md

pySICM Analysis

Analysis tool for .sicm files created with our home-built Scanning Ion Conductance Microscope (SICM).

This program is loosely based on a Matlab program written by Dr. Patrick Happel. It still has beta status and will be updated infrequently in the future. At the moment, it is limited to display and manipulate data produced by our own SICM setup which is controlled by another python software written by Dr. Patrick Happel.

Prerequisites

  • Python 3.10
  • PyQt 6

Instructions

Run python3 sicm_analyzer/main.py from the project's root folder

Owner

  • Name: nanoscopy-RUBION
  • Login: nanoscopy-RUBION
  • Kind: organization
  • Location: Germany

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Lesslich"
  given-names: "Heiko Michael"
  orcid: "https://orcid.org/0000-0002-5546-4676"
title: "pySICM Analysis"
version: 0.1.1
doi: 10.5281/zenodo.7930581
date-released: 2023-05-12
url: "https://github.com/nanoscopy-RUBION/pySICM_Analysis"

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Dependencies

requirements.txt pypi
  • Pillow ==9.2.0
  • PyPDF2 ==2.10.0
  • PyQt6 ==6.3.1
  • PyQt6-Qt6 ==6.3.1
  • PyQt6-sip ==13.4.0
  • PyWavelets ==1.3.0
  • asteval ==0.9.28
  • astroid ==2.12.9
  • autopep8 ==1.6.0
  • cycler ==0.11.0
  • dill ==0.3.5.1
  • flake8 ==4.0.1
  • fonttools ==4.34.4
  • future ==0.18.3
  • imageio ==2.21.1
  • isort ==5.10.1
  • jedi ==0.18.1
  • joblib ==1.1.0
  • kiwisolver ==1.4.4
  • lazy-object-proxy ==1.7.1
  • lmfit ==1.1.0
  • matplotlib ==3.5.2
  • mccabe ==0.6.1
  • mpmath ==1.2.1
  • networkx ==2.8.5
  • numpy ==1.23.1
  • packaging ==21.3
  • parso ==0.8.3
  • platformdirs ==2.5.2
  • pluggy ==1.0.0
  • pycodestyle ==2.8.0
  • pydocstyle ==6.1.1
  • pyflakes ==2.4.0
  • pylint ==2.15.2
  • pyparsing ==3.0.9
  • python-dateutil ==2.8.2
  • python-lsp-jsonrpc ==1.0.0
  • python-lsp-server ==1.5.0
  • pytoolconfig ==1.2.2
  • rope ==1.3.0
  • savefig ==0.0.4
  • scikit-image ==0.19.3
  • scikit-learn ==1.1.1
  • scipy ==1.9.0
  • six ==1.16.0
  • sklearn ==0.0
  • snowballstemmer ==2.2.0
  • symfit ==0.5.5
  • sympy ==1.11.1
  • threadpoolctl ==3.1.0
  • tifffile ==2022.8.12
  • toml ==0.10.2
  • tomli ==2.0.1
  • tomlkit ==0.11.4
  • toposort ==1.7
  • ujson ==5.4.0
  • uncertainties ==3.1.7
  • whatthepatch ==1.0.2
  • wrapt ==1.14.1
  • yapf ==0.32.0