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NOMAD

NOMAD: A distributed web-based platform for managing materials science research data - Published in JOSS (2023)

https://github.com/FAIRmat-NFDI/nomad

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 7 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: joss.theoj.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (13.9%) to scientific vocabulary

Scientific Fields

Mathematics Computer Science - 88% confidence
Earth and Environmental Sciences Physical Sciences - 87% confidence
Sociology Social Sciences - 87% confidence
Last synced: 4 months ago · JSON representation

Repository

NOMAD lets you manage and share your materials science data in a way that makes it truly useful to you, your group, and the community.

Basic Info
  • Host: GitHub
  • Owner: FAIRmat-NFDI
  • License: apache-2.0
  • Language: Python
  • Default Branch: develop
  • Homepage: https://nomad-lab.eu
  • Size: 442 MB
Statistics
  • Stars: 91
  • Watchers: 4
  • Forks: 24
  • Open Issues: 34
  • Releases: 4
Created almost 5 years ago · Last pushed 4 months ago
Metadata Files
Readme Changelog Contributing License Authors

README.md

pipeline status backend coverage report frontend coverage report DOI

NOMAD is a web-based research data management software for materials science. You find the official project homepage and documentation here https://nomad-lab.eu. NOMAD is used to provide an open service for managing and publish research data of the same name. On-premise installations of NOMAD (Oasis) allow research groups to locally manage data with customized NOMAD version and with their own compute and storage resources.

Getting started

Here are some resources that will get you started with NOMAD:

Contributing

See also the more detailed contributing guide in the documentation.

There are two forks of this repository, one on GitHub and one on MPCDF's GitLab.

NOMAD's GitHub project always contains the current develop branch. It can be used to report issues, fork the project, and to create pull requests. After review, pull requests will be pushed to the GitLab project and merged there. Use the regular GitHub flow to contribute as an external developer here.

NOMAD's GitLab project at MPCDF is used for the main development activities. It runs all CI/CD pipelines and official deployments. It is openly readable, but requires an MPCDF account for active contributions. If you are a member of the FAIRmat or NOMAD CoE project, contribute here.

Most sub-modules, e.g. NOMAD's parsers, are hosted in individual projects on GitHub within the FAIRmat-NFDI organization.

Getting started

For a general project overview visit the official project page https://nomad-lab.eu. For specific use of the NOMAD software follow these links to our documentation:

Citing NOMAD

If you use this software in your research, for data sharing, or in your lab, we encourage you to cite the following paper.

Scheidgen et al., (2023). NOMAD: A distributed web-based platform for managing materials science research data. Journal of Open Source Software, 8(90), 5388, https://doi.org/10.21105/joss.05388

For citation in academic works, you can use this BibTeX file.

Changelog

See CHANGELOG.md for more detailed information about changes and fixes.

Owner

  • Name: FAIRmat
  • Login: FAIRmat-NFDI
  • Kind: organization
  • Location: Germany

FAIR data infrastructure for condensed-matter physics and the chemical physics of solids

GitHub Events

Total
  • Watch event: 1
  • Delete event: 1
  • Push event: 5
Last Year
  • Watch event: 1
  • Delete event: 1
  • Push event: 7

Issues and Pull Requests

Last synced: 4 months ago

Dependencies

.github/workflows/push-pr-to-gitlab.yaml actions
  • actions/checkout v3 composite
  • mshick/add-pr-comment v2 composite
Dockerfile docker
  • base_node latest build
  • base_python latest build
  • node 16.15 build
  • python 3.9-slim build
gui/public/tinymce/bower.json bower
ops/docker-compose/infrastructure/docker-compose.yml docker
  • elasticsearch 7.17.24
  • mongo 5
  • rabbitmq 4
gui/package.json npm
  • @babel/eslint-parser ^7.22.15 development
  • @craco/craco ^6.4.5 development
  • @material-ui/codemod ^4.5.0 development
  • @testing-library/jest-dom ^5.16.4 development
  • @testing-library/react ^12.1.5 development
  • @testing-library/user-event ^14.2.0 development
  • @welldone-software/why-did-you-render ^7.0.1 development
  • craco-workbox ^0.2.0 development
  • cross-env ^7.0.3 development
  • eslint ^7.11.0 development
  • eslint-config-standard ^17.0.0 development
  • eslint-plugin-import ^2.14.0 development
  • eslint-plugin-jest ^26.5.3 development
  • eslint-plugin-n ^15.2.2 development
  • eslint-plugin-promise ^6.0.0 development
  • eslint-plugin-react ^7.30.1 development
  • eslint-plugin-testing-library ^5.5.1 development
  • jest-junit ^13.2.0 development
  • msw ^0.36.8 development
  • react-docgen ^5.4.2 development
  • serve ^13.0.2 development
  • @date-io/date-fns ^1.3.13
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  • @fontsource/titillium-web ^4.2.2
  • @h5web/app 8.0.0
  • @h5web/lib 8.0.0
  • @lauri-codes/materia ^1.0.1
  • @material-ui/core ^4.12.4
  • @material-ui/icons ^4.11.3
  • @material-ui/lab ^4.0.0-alpha.61
  • @material-ui/pickers ^3.3.10
  • @navjobs/upload ^3.2.0
  • @react-keycloak/web ^3.4.0
  • @testing-library/react-hooks ^8.0.1
  • @tinymce/tinymce-react ^4.1.0
  • autosuggest-highlight ^3.1.1
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  • fetch ^1.1.0
  • html-to-react ^1.3.3
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  • qs ^6.10.5
  • react ^17.0.2
  • react-app-polyfill ^1.0.1
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  • react-cookie ^3.0.8
  • react-copy-to-clipboard ^5.0.1
  • react-detectable-overflow ^0.6.2
  • react-dom ^17.0.2
  • react-dropzone ^14.2.3
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  • react-json-view ^1.19.1
  • react-markdown ^8.0.3
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  • react-resize-detector ^9.1.0
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  • react-router-dom ^5.1.2
  • react-scripts 4.0.3
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  • react-virtualized-auto-sizer ^1.0.2
  • react-window ^1.8.5
  • recoil 0.7.5
  • recompose ^0.30.0
  • remark ^14.0.2
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  • tinymce ^6.0.3
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  • yup ^0.32.11
gui/public/tinymce/package.json npm
gui/yarn.lock npm
  • 2087 dependencies
gui/public/tinymce/composer.json packagist
examples/data/cow_tutorial/nomad-countries/pyproject.toml pypi
  • nomad-lab >=1.2.2dev578
pyproject.toml pypi
  • ase ~=3.22.0
  • bitarray >=2.3.5
  • cachetools >=4.2.4
  • click >=7.1.2
  • docstring-parser >=0.12
  • elasticsearch-dsl >=7,<8
  • h5py >=3.6.0
  • httpx >=0.23.3,<0.28
  • jmespath >=0.10.0
  • jsonpath-ng *
  • lxml >=5.2
  • matid >=2.1.3
  • msgpack >=1
  • msgspec *
  • numpy >=1.22.4,<2
  • orjson >=1.0
  • pandas >=2
  • pint ==0.17
  • plotly <6
  • py-spy *
  • pydantic >=2
  • pyinstrument *
  • pymatgen >=2023.5.10
  • python-keycloak >=0.26.1
  • python-magic *
  • python-magic-bin sys_platform=="win32"
  • pytz >=2022.7.1
  • pyyaml >=6.0
  • requests >=2.27.1,<2.32.0
  • rfc3161ng >=2.1.3
  • scipy >=1.7.1
  • unidecode *
  • xarray >=0.20.2
requirements-dev.txt pypi
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  • arrow ==1.3.0 development
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  • docker ==7.1.0 development
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requirements-plugins.txt pypi
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requirements.txt pypi
  • aiofiles ==24.1.0
  • alembic ==1.15.1
  • amqp ==5.3.1
  • annotated-types ==0.7.0
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  • ase ==3.22.1
  • async-property ==0.2.2
  • attrs ==25.3.0
  • beautifulsoup4 ==4.12.3
  • billiard ==4.2.1
  • bitarray ==3.2.0
  • blinker ==1.9.0
  • cachetools ==5.5.2
  • celery ==5.4.0
  • certifi ==2025.1.31
  • certipy ==0.2.1
  • cffi ==1.17.1
  • charset-normalizer ==3.4.1
  • click ==8.1.8
  • click-didyoumean ==0.3.1
  • click-plugins ==1.1.1
  • click-repl ==0.3.0
  • colorama ==0.4.6
  • contourpy ==1.3.1
  • cryptography ==44.0.2
  • cycler ==0.12.1
  • deprecation ==2.1.0
  • dnspython ==2.7.0
  • docker ==7.1.0
  • dockerspawner ==14.0.0
  • docstring-parser ==0.16
  • elasticsearch ==7.17.12
  • elasticsearch-dsl ==7.4.1
  • email-validator ==2.2.0
  • escapism ==1.0.1
  • exceptiongroup ==1.2.2
  • fastapi ==0.115.11
  • fonttools ==4.56.0
  • fqdn ==1.5.1
  • greenlet ==3.1.1
  • gunicorn ==23.0.0
  • h11 ==0.14.0
  • h5grove ==2.3.0
  • h5py ==3.13.0
  • httpcore ==1.0.7
  • httptools ==0.6.4
  • httpx ==0.27.2
  • idna ==3.10
  • isodate ==0.7.2
  • isoduration ==20.11.0
  • jinja2 ==3.1.6
  • jmespath ==1.0.1
  • joblib ==1.4.2
  • jsonpath-ng ==1.7.0
  • jsonpointer ==3.0.0
  • jsonschema ==4.23.0
  • jsonschema-specifications ==2024.10.1
  • jupyter-events ==0.12.0
  • jupyterhub ==5.2.1
  • jwcrypto ==1.5.6
  • kiwisolver ==1.4.8
  • kombu ==5.5.0
  • lark ==1.2.2
  • latexcodec ==3.0.0
  • lxml ==5.3.1
  • mako ==1.3.9
  • markupsafe ==3.0.2
  • matid ==2.1.5
  • matplotlib ==3.10.1
  • mongoengine ==0.29.1
  • mongomock ==4.3.0
  • monty ==2025.3.3
  • mpmath ==1.3.0
  • msgpack ==1.1.0
  • msgspec ==0.19.0
  • networkx ==3.4.2
  • numpy ==1.26.4
  • oauthenticator ==17.3.0
  • oauthlib ==3.2.2
  • optimade ==1.2.3
  • orjson ==3.10.15
  • packaging ==24.2
  • palettable ==3.3.3
  • pamela ==1.2.0
  • pandas ==2.2.3
  • pillow ==11.1.0
  • pint ==0.17
  • plotly ==5.24.1
  • ply ==3.11
  • prometheus-client ==0.21.1
  • prompt-toolkit ==3.0.50
  • psutil ==7.0.0
  • py-spy ==0.4.0
  • pyasn1 ==0.6.1
  • pyasn1-modules ==0.4.1
  • pybtex ==0.24.0
  • pycparser ==2.22
  • pydantic ==2.10.6
  • pydantic-core ==2.27.2
  • pydantic-settings ==2.8.1
  • pyinstrument ==5.0.1
  • pyjwt ==2.10.1
  • pymatgen ==2024.5.1
  • pymongo ==4.11.3
  • pyparsing ==3.2.1
  • python-dateutil ==2.9.0.post0
  • python-dotenv ==1.0.1
  • python-json-logger ==3.3.0
  • python-keycloak ==5.3.1
  • python-logstash ==0.4.8
  • python-magic ==0.4.27
  • python-magic-bin ==0.4.14
  • python-multipart ==0.0.20
  • pytz ==2025.1
  • pywin32 ==310
  • pyyaml ==6.0.2
  • rdflib ==5.0.0
  • referencing ==0.36.2
  • requests ==2.31.0
  • requests-toolbelt ==1.0.0
  • rfc3161ng ==2.1.3
  • rfc3339-validator ==0.1.4
  • rfc3986-validator ==0.1.1
  • rpds-py ==0.23.1
  • ruamel-yaml ==0.18.10
  • ruamel-yaml-clib ==0.2.12
  • scikit-learn ==1.6.1
  • scipy ==1.15.2
  • sentinels ==1.0.0
  • six ==1.17.0
  • sniffio ==1.3.1
  • soupsieve ==2.6
  • spglib ==2.6.0
  • sqlalchemy ==2.0.39
  • starlette ==0.46.1
  • structlog ==25.2.0
  • sympy ==1.13.3
  • tabulate ==0.9.0
  • tenacity ==9.0.0
  • threadpoolctl ==3.6.0
  • tifffile ==2025.3.13
  • tornado ==6.4.2
  • tqdm ==4.67.1
  • traitlets ==5.14.3
  • types-python-dateutil ==2.9.0.20241206
  • typing-extensions ==4.12.2
  • tzdata ==2025.1
  • uncertainties ==3.2.2
  • unidecode ==1.3.8
  • uri-template ==1.3.0
  • urllib3 ==1.26.20
  • uvicorn ==0.34.0
  • uvloop ==0.21.0
  • validators ==0.34.0
  • vine ==5.1.0
  • watchfiles ==1.0.4
  • wcwidth ==0.2.13
  • webcolors ==24.11.1
  • websockets ==15.0.1
  • xarray ==2025.3.0
  • zipstream-ng ==1.8.0
setup.py pypi