ceiba

Web service to manage scientific simulation data

https://github.com/nlesc-nano/ceiba

Science Score: 54.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
  • Academic publication links
    Links to: zenodo.org
  • Committers with academic emails
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (16.1%) to scientific vocabulary

Keywords

graphql python scientific-computing web-service workflow-automation

Keywords from Contributors

mesh molecular-dynamics interactive gromacs
Last synced: 6 months ago · JSON representation ·

Repository

Web service to manage scientific simulation data

Basic Info
  • Host: GitHub
  • Owner: nlesc-nano
  • License: apache-2.0
  • Language: Python
  • Default Branch: main
  • Homepage:
  • Size: 504 KB
Statistics
  • Stars: 4
  • Watchers: 1
  • Forks: 1
  • Open Issues: 6
  • Releases: 4
Topics
graphql python scientific-computing web-service workflow-automation
Created over 5 years ago · Last pushed about 2 years ago
Metadata Files
Readme Changelog Contributing License Code of conduct Citation

README.rst

.. image:: https://github.com/nlesc-nano/ceiba/workflows/build/badge.svg
   :target: https://github.com/nlesc-nano/ceiba/actions
.. image:: https://readthedocs.org/projects/ceiba/badge/?version=latest
   :target: https://ceiba.readthedocs.io/en/latest/?badge=latest
.. image:: https://codecov.io/gh/nlesc-nano/ceiba/branch/main/graph/badge.svg?token=MTD70XNYEA
   :target: https://codecov.io/gh/nlesc-nano/ceiba
.. image:: https://zenodo.org/badge/297567281.svg
   :target: https://zenodo.org/badge/latestdoi/297567281

#####
ceiba
#####
🧬 🔭 🔬 Scientific simulations generate large volume of data that needs to be stored and processed
by multidisciplinary teams across different geographical locations. Distributing computational expensive
simulations among the available resources, avoiding duplication and keeping the data safe are challenges
that scientists face every day.

Ceiba and its command line interface `Ceiba-cli `_
solve the problem of computing, storing and securely sharing
computationally expensive simulation results. Researchers can save significant time and resources by easily
computing new data and reusing existing simulation data to answer their questions.

See `documentation `_ and `blog post `_.


Installation
************
The `provisioning folder `_ contains the instructions
to deploy the web service using docker. Alternatively, you can deploy the web service locally using
the following instructions:

#. 🐳 Install `Docker `_

#. 🚀 Define a environment variable `MONGO_PASSWORD` with the database password. Now you can run the following
   command to start both the server and the mongodb services:
   ::

      provisioning/start_app.sh


Contributing
************

If you want to contribute to the development of ceiba,
have a look at the `contribution guidelines `_.

License
*******

Copyright (c) 2020-2021, Netherlands eScience Center

Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.



Credits
*******

This package was created with `Cookiecutter `_ and the `NLeSC/python-template `_.

Owner

  • Name: Nanomaterial simulation packages
  • Login: nlesc-nano
  • Kind: organization

Citation (CITATION.cff)

# YAML 1.2
---
cff-version: 1.2.0
title: "ceiba"
authors:
  -
    family-names: Zapata
    given-names: Felipe
    orcid: "https://orcid.org/0000-0001-8286-677X"
date-released: 2020-10-03
keywords:
  - "quantum-chemistry"
  - "materials-science"
version: "0.1.0"
repository-code: "https://github.com/nlesc-nano/ceiba"
message: "If you use this software, please cite it using these metadata."
license: Apache-2.0

GitHub Events

Total
Last Year

Committers

Last synced: 10 months ago

All Time
  • Total Commits: 209
  • Total Committers: 5
  • Avg Commits per committer: 41.8
  • Development Distribution Score (DDS): 0.1
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
felipez t****l@g****m 188
dependabot[bot] 4****] 10
Nicolas Renaud n****d@g****m 6
Abel Soares Siqueira a****a@g****m 3
Bas van Beek b****k@h****m 2

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 27
  • Total pull requests: 47
  • Average time to close issues: 18 days
  • Average time to close pull requests: 25 days
  • Total issue authors: 4
  • Total pull request authors: 4
  • Average comments per issue: 1.7
  • Average comments per pull request: 1.04
  • Merged pull requests: 41
  • Bot issues: 0
  • Bot pull requests: 22
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • felipeZ (13)
  • sverhoeven (2)
  • dimitridarras (1)
  • junjun-zhang (1)
Pull Request Authors
  • dependabot[bot] (14)
  • felipeZ (12)
  • NicoRenaud (2)
  • abelsiqueira (1)
Top Labels
Issue Labels
enhancement (6) bug (2) documentation (1) experimental (1)
Pull Request Labels
dependencies (14) github_actions (6) python (4)

Dependencies

requirements.txt pypi
  • setuptools *
setup.py pypi
  • aiohttp ==3.7.3
  • more-itertools *
  • pandas *
  • pymongo *
  • requests *
  • tartiflette *
  • tartiflette-aiohttp *