Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/ajpelu/psylvestris_datapaper

Processing of Illumina MiSeq sequencing reads (16S V3-V4 and ITS2) from the root endosphere and rhizosphere of decline-affected and asymptomatic Pinus sylvestris trees

https://github.com/ajpelu/psylvestris_datapaper

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 6 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.4%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Processing of Illumina MiSeq sequencing reads (16S V3-V4 and ITS2) from the root endosphere and rhizosphere of decline-affected and asymptomatic Pinus sylvestris trees

Basic Info
  • Host: GitHub
  • Owner: ajpelu
  • License: mit
  • Language: TeX
  • Default Branch: main
  • Size: 1.98 MB
Statistics
  • Stars: 0
  • Watchers: 0
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Fork of anitalasa/Psylvestris_DataPaper
Created almost 2 years ago · Last pushed about 1 year ago

https://github.com/ajpelu/Psylvestris_DataPaper/blob/main/ 

# DataPaper: Root-associated microbiota of decline-affected and asymptomatic *Pinus sylvestris* trees 
[![DOI](https://zenodo.org/badge/835811670.svg)](https://zenodo.org/doi/10.5281/zenodo.13711241)

This repository contains scripts and analysis used for the datapaper "Root-associated microbiota of decline-affected and asymptomatic *Pinus sylvestris* trees". This dataset was used for the paper Lasa et al. 2024. 

## Website
You can see the website of the repo at: https://anitalasa.github.io/Psylvestris_DataPaper

## Acknowledgements 
This study was funded by: 

* MICINN through European Regional Development Fund *SUMHAL, LIFEWATCH-2019-09-CSIC-13, POPE 2014-2020*. More info about the [SUMHAL](https://lifewatcheric-sumhal.csic.es/) project (Sustainability for Mediterranean Hotspots in Andalusia integrating LifeWatch ERIC).  

* Antonio J. Prez-Luque was funded by MCIN/AEI/10.13039/501100011033 and by European Union NextGenerationEU/PRTR with a Juan de la Cierva fellowship programme (Grant JDC2022-050056-I)

## How to cite: 

### Data Paper: 
Building, still unpublished

### Repository: 
Ana V. Lasa & Antonio J. Prez-Luque (2024) Code repository of the DataPaper: Root-associated microbiota of decline-affected and asymptomatic *Pinus sylvestris* trees. http://doi.org/10.5281/zenodo.13711241

### Main paper: 
Lasa, A.V.; Fernndez-Gonzlez, A.J.; Villadas, P.J.; Mercado-Blanco, J.; Prez-Luque, A.J.; Fernndez-Lpez, M. (2024). Mediterranean pine forest decline: a matter of root-associated microbiota and climate change. Science of The Total Environment 926: 171858. https://doi.org/10.1016/j.scitotenv.2024.171858

Owner

  • Name: Antonio J Perez-Luque
  • Login: ajpelu
  • Kind: user
  • Location: Granada (Spain)

Ecologist. Applied Statistics. Ecoinformatics. @ecoinf_AEET

GitHub Events

Total
  • Push event: 2
Last Year
  • Push event: 2