https://github.com/akikuno/midsv - 0.11.0

fix bug: Corrected an issue where num_microhomology becomes 0 when qscore is False.

- Python
Published by akikuno about 2 years ago

https://github.com/akikuno/midsv - 0.10.2

debug keep options

- Python
Published by akikuno over 2 years ago

https://github.com/akikuno/midsv - 0.10.1

• add keep option to keep either 'FLAG', 'POS', 'SEQ', 'QUAL', 'CIGAR' or 'CSTAG' infomation of SAM

- Python
Published by akikuno over 2 years ago

https://github.com/akikuno/midsv - 0.10.0

update midsv.io to return generator, not list to save memory

- Python
Published by akikuno almost 3 years ago

https://github.com/akikuno/midsv - 0.9.5

v0.9.5: remove sequences that differ in length from the reference sequence

- Python
Published by akikuno almost 3 years ago

https://github.com/akikuno/midsv - 0.9.0

update remove_resequence - the definition of resequence includes The shorter reads are completely included in the longer reads - the longest alignment will be retain, not discarded.

- Python
Published by akikuno almost 3 years ago

https://github.com/akikuno/midsv - 0.8.4

• update remove_resequence to ignore "N"

- Python
Published by akikuno about 3 years ago

https://github.com/akikuno/midsv - 0.8.3

• add length of splicing in return_end_of_current_read

- Python
Published by akikuno about 3 years ago

https://github.com/akikuno/midsv - 0.8.2

update to support --splice option using minimap2/mappy

- Python
Published by akikuno about 3 years ago

https://github.com/akikuno/midsv - 0.7.1

remove proofread.filter_length

- Python
Published by akikuno over 3 years ago

https://github.com/akikuno/midsv - 0.7.0

add features into proofread.join to discard microhomology alignments

- Python
Published by akikuno over 3 years ago

https://github.com/akikuno/midsv - 0.6.2

• qscore can now be calculated even when midsv==False and cssplit == True

- Python
Published by akikuno over 3 years ago

https://github.com/akikuno/midsv - 0.6.1

debug filter_length - fix typo reflength = len(samdict[0]["CSTAG"].split(",")) -> reflength = len(samdict[0]["CSSPLIT"].split(","))

- Python
Published by akikuno over 3 years ago

https://github.com/akikuno/midsv - 0.6.0

Add optional arguments to allow output of MIDSV, CSSPLIT, and QSCORE.

- Python
Published by akikuno over 3 years ago

https://github.com/akikuno/midsv - 0.5.0

add read_jsonl and write_jsonl

- Python
Published by akikuno over 3 years ago

https://github.com/akikuno/midsv - 0.4.2

add tests to filter_length

- Python
Published by akikuno over 3 years ago

https://github.com/akikuno/midsv - 0.4.1

• fix the bug occurs when the QNAME contains "@" anywhere (e.g. "hoge@fuga").

- Python
Published by akikuno over 3 years ago

https://github.com/akikuno/midsv - 0.4.0

• Add functions {midsv.readsam} and {midsv.checksam_format}

- Python
Published by akikuno over 3 years ago

https://github.com/akikuno/midsv - 0.3.1

Refine import path in main.py

- Python
Published by akikuno over 3 years ago

https://github.com/akikuno/midsv - 0.3.0

• Update README

- Python
Published by akikuno over 3 years ago

https://github.com/akikuno/midsv - 0.2.0

Rename to MIDSV from MIDS - PyPI reports mids is too similar to an existing project and may be confusable.

- Python
Published by akikuno over 3 years ago

https://github.com/akikuno/midsv - 0.1.0

Upload to PyPI

- Python
Published by akikuno over 3 years ago