https://github.com/al-murphy/al-murphy
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
○Academic publication links
-
○Committers with academic emails
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (8.6%) to scientific vocabulary
Last synced: 10 months ago
·
JSON representation
Repository
Basic Info
- Host: GitHub
- Owner: Al-Murphy
- Default Branch: master
- Size: 15.6 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Created about 5 years ago
· Last pushed over 1 year ago
Metadata Files
Readme
README.md
Hello, I'm Alan Murphy 👋
I'm a postdoctoral research scientist, working in the Koo lab at Cold Spring Harbor Laboratory. My work focuses on deep learning for genomics. See my personal website to learn more about my work and experience.
Software:
- MungeSumstats - Maintainer & Creator - Bioconductor R package for the standardisation and quality control of GWAS summary statistics to address the lack of standardisation in the field. MungeSumstats can handle the most common summary statistic formats, including variant call format (VCF) producing a reformatted, standardised, tabular summary statistic file, VCF or R native data object.
- Enformer Celltyping - Maintainer & Creator - a deep learning model which incorporates distal effects of DNA interactions, up to 100,000 base-pairs away, to predict epigenetic signals in previously unseen cell types using DNA and chromatin accessibility data.
- ChromExpress - Maintainer & Creator - Deep learning models for the predictions of gene expression from histone mark signals
Helpful documentation:
Owner
- Name: Alan Murphy
- Login: Al-Murphy
- Kind: user
- Location: London
- Company: UK DRI at Imperial College London
- Website: https://al-murphy.github.io/
- Twitter: Al_Murphy_
- Repositories: 1
- Profile: https://github.com/Al-Murphy
Computational Biologist, PhD Student, Neurogenomics
GitHub Events
Total
- Push event: 1
Last Year
- Push event: 1
Issues and Pull Requests
Last synced: 12 months ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0