mpn_7t_pipeline - Version v0.1.3

✨ New Features & Updates

• Data Compatibility: Updated string patterns for improved compatibility with Paris datasets, specifically for identifiers like fmap-b1_*_p2* and anat-nm_acq-MTboost_sag_0*55mm.
  > Note: fmap-b1 acquisitions only contain a fieldmap, not the anatomical image.
• Docker Update: Upgraded the Docker environment to streamline operations and ensure consistency.
  
• Python Migration: Transitioned dcmSort from Bash to Python for better maintainability and flexibility.

🛠️ Fixes & Improvements

• Workflow Enhancement: Added the --force flag to the workflow, allowing overwriting of subject data when necessary.
  
• Ignore Rules: Included inv-*MP2RANGE* in .bidsignore to prevent unnecessary data processing. See BIDS validator issue #185
• Script Fix: Resolved issues in dcmSort.py for improved sorting accuracy.

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Published by rcruces about 1 year ago

mpn_7t_pipeline - v0.1.2

v0.1.2

This release introduces multiple updates and refinements to improve workflow robustness and enhance compatibility across various acquisitions. Below is a summary of changes:

Bug Fixes:

Corrected a typo in the acq-mtw run management.

Enhancements:

• Updated rules for handling T2starmap, task-rest, task-present, and acq-mtw when multiple runs are present.
• Refined naming schema for ASPIRE, ROMEO, and SWI to ensure consistency and clarity.
• Improved naming conventions for MTW and T2starw acquisitions.
• Improve manager of runs for all the task (rest, present, cross)

Maintenance:

• Added .dockerignore and .bidsignore files to streamline repository management.
• This release aims to standardize naming conventions and improve run handling, laying the groundwork for a more stable and efficient workflow.

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Published by rcruces about 1 year ago

mpn_7t_pipeline - v0.1.1

v0.1.1 Release Notes

Release Date: December 21, 2024

• Matched names of angio and epi with PNI dataset.
• Changed Warn function name to Warning
• Expanded README for the BIDS dataset

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Published by rcruces over 1 year ago

mpn_7t_pipeline - v0.1.0

v0.1.0 Release Notes

Release Date: December 20, 2024

This is the initial release of the repository, marking the version v0.1.0. This version includes the foundational features and functionalities necessary for converting DICOM files to BIDS format. Below are the key highlights of this release:

Key Features:

• DICOM to BIDS Conversion:

  • Scripts to convert raw DICOM files to BIDS-formatted data.
  • Ensures compliance with BIDS standards for MRI data.

• Integration with LORIS, CBRAIN, and micapipe:

• • Utilizes micapipe for standardized preprocessing of MRI data.

• Containerization:

  • Includes a Dockerfile for containerizing the pipeline.
  • Ensures reproducibility and easy deployment.

Repository Contents:

• README:

  • Detailed documentation on the project's goals, setup instructions, and usage guidelines.

• LICENSE:

  • Information on the repository's licensing terms for open-source distribution.

• Dockerfile:

  • Configuration to containerize the pipeline for reproducibility and easy deployment.

This release sets the groundwork for future enhancements and additional features. We welcome feedback and contributions from the community to improve and expand the capabilities of this repository.

- Shell
Published by rcruces over 1 year ago