Spikeometric

Spikeometric: Linear Non-Linear Cascade Spiking Neural Networks with Pytorch Geometric - Published in JOSS (2023)

https://github.com/bioai-oslo/spikeometric

Science Score: 98.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
✓
DOI references
Found 4 DOI reference(s) in README and JOSS metadata
✓
Academic publication links
Links to: joss.theoj.org
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Committers with academic emails
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Institutional organization owner
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JOSS paper metadata
Published in Journal of Open Source Software

Scientific Fields

Mathematics Computer Science - 84% confidence

Sociology Social Sciences - 64% confidence

Last synced: 4 months ago · JSON representation ·

Repository

Spiking Neural Network Simulator based on Generalized Linear Models

Basic Info

Host: GitHub
Owner: bioAI-Oslo
License: gpl-3.0
Language: Python
Default Branch: main
Size: 50.5 MB

Statistics

Stars: 8
Watchers: 3
Forks: 1
Open Issues: 3
Releases: 1

Created over 3 years ago · Last pushed over 2 years ago

Metadata Files

Readme License Citation

Spikeometric - Linear Non-Linear Cascade Spiking Neural Networks with PyTorch Geometric

The spikeometric package is a framework for simulating spiking neural networks (SNNs) using generalized linear models (GLMs) and Linear-Nonlinear-Poisson models (LNPs) in Python. It is built on top of the PyTorch Geometric package and makes use of their powerful graph neural network (GNN) modules and efficient graph representation. It is designed to be fast, flexible and easy to use, and is intended for research purposes.

Install

Before installing spikeometric you will need to download versions of PyTorch and PyTorch Geometric that work with your hardware. When you have done that (for example in a conda environment), you are ready to download spikeometric with:

pip install spikeometric

Documentation

For more information about the package and a full API reference check out our documentation.

How to contribute

We welcome contributions from users and developers. If you find bugs, please report an issue on github. If you would like to contribute to new features you can either find an issue you would like to work on, or fork this project and develop something great. Send pull request for review. We will respond as soon as possible.

Owner

Name: bioAI
Login: bioAI-Oslo
Kind: organization

Repositories: 11
Profile: https://github.com/bioAI-Oslo

JOSS Publication

Spikeometric: Linear Non-Linear Cascade Spiking Neural Networks with Pytorch Geometric

Published

September 20, 2023

DOI

10.21105/joss.05451

Volume 8, Issue 89, Page 5451

Authors

Jakob L. Sønstebø

Department of Numerical Analysis and Scientific Computing, Simula Research Laboratory, Oslo, Norway

Herman Brunborg
Department of Physics, University of Oslo, Oslo, Norway

Mikkel Elle Lepperød

Department of Numerical Analysis and Scientific Computing, Simula Research Laboratory, Oslo, Norway, Department of Physics, University of Oslo, Oslo, Norway

Editor

Mehmet Hakan Satman

Citation (CITATION.cff)

cff-version: "1.2.0"
authors:
- family-names: Sønstebø
  given-names: Jakob L.
  orcid: "https://orcid.org/0009-0009-0584-9293"
- family-names: Brunborg
  given-names: Herman
- family-names: Lepperød
  given-names: Mikkel Elle
  orcid: "https://orcid.org/0000-0002-4262-5549"
doi: 10.5281/zenodo.8358903
message: If you use this software, please cite our article in the
  Journal of Open Source Software.
preferred-citation:
  authors:
  - family-names: Sønstebø
    given-names: Jakob L.
    orcid: "https://orcid.org/0009-0009-0584-9293"
  - family-names: Brunborg
    given-names: Herman
  - family-names: Lepperød
    given-names: Mikkel Elle
    orcid: "https://orcid.org/0000-0002-4262-5549"
  date-published: 2023-09-20
  doi: 10.21105/joss.05451
  issn: 2475-9066
  issue: 89
  journal: Journal of Open Source Software
  publisher:
    name: Open Journals
  start: 5451
  title: "Spikeometric: Linear Non-Linear Cascade Spiking Neural
    Networks with Pytorch Geometric"
  type: article
  url: "https://joss.theoj.org/papers/10.21105/joss.05451"
  volume: 8
title: "Spikeometric: Linear Non-Linear Cascade Spiking Neural Networks
  with Pytorch Geometric"

GitHub Events

Total

Last Year

Committers

Last synced: 5 months ago

All Time

Total Commits: 137
Total Committers: 4
Avg Commits per committer: 34.25
Development Distribution Score (DDS): 0.431

Past Year

Commits: 0
Committers: 0
Avg Commits per committer: 0.0
Development Distribution Score (DDS): 0.0

Top Committers

Name	Email	Commits
JakobSonstebo	j**6@g**m	78
Jakob	J****o	31
Herman Brunborg	h**n@b**m	18
Mikkel Elle Lepperød	l**k@g**m	10

Committer Domains (Top 20 + Academic)

brunborg.com: 1

Issues and Pull Requests

Last synced: 4 months ago

All Time

Total issues: 8
Total pull requests: 24
Average time to close issues: about 1 month
Average time to close pull requests: 3 days
Total issue authors: 3
Total pull request authors: 4
Average comments per issue: 1.5
Average comments per pull request: 0.08
Merged pull requests: 21
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 0
Pull requests: 0
Average time to close issues: N/A
Average time to close pull requests: N/A
Issue authors: 0
Pull request authors: 0
Average comments per issue: 0
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

Saran-nns (3)
lepmik (3)
disadone (1)

Pull Request Authors

JakobSonstebo (15)
lepmik (4)
jbytecode (1)
hermabr (1)

Top Labels

Issue Labels

bug (1) enhancement (1)

Pull Request Labels

Packages

Total packages: 1
Total downloads:
- pypi 8 last-month

Total dependent packages: 0
Total dependent repositories: 0
Total versions: 5
Total maintainers: 1

pypi.org: spikeometric

Spikeometric is a Pytorch Geometric based framework for simulating Spiking Neural Networks using Linear Non-linear Cascade models

Homepage: https://github.com/bioAI-Oslo/Spikeometric
Documentation: https://spikeometric.readthedocs.io/en/latest/
License: GNU General Public License v3.0
Latest release: 1.0.3
published over 2 years ago

Versions: 5
Dependent Packages: 0
Dependent Repositories: 0
Downloads: 8 Last month

Rankings

Dependent packages count: 6.6%

Downloads: 17.5%

Average: 20.2%

Forks count: 23.2%

Stargazers count: 23.3%

Dependent repos count: 30.6%

Maintainers (1)

jakobsonstebo

Last synced: 4 months ago

Dependencies

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poetry.lock pypi

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Spikeometric

Science Score: 98.0%

Scientific Fields

Repository

Basic Info

Statistics

Metadata Files

README.md

Spikeometric - Linear Non-Linear Cascade Spiking Neural Networks with PyTorch Geometric

Install

Documentation

How to contribute

Owner

JOSS Publication

Spikeometric: Linear Non-Linear Cascade Spiking Neural Networks with Pytorch Geometric

Authors

Editor

Tags

Citation (CITATION.cff)

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Packages

pypi.org: spikeometric

Rankings

Maintainers (1)

Dependencies