rtaxonworks

R client for TaxonWorks

https://github.com/speciesfilegroup/rtaxonworks

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

○
CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
○
DOI references
○
Academic publication links
✓
Committers with academic emails
1 of 1 committers (100.0%) from academic institutions
○
Institutional organization owner
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (14.7%) to scientific vocabulary

Last synced: 9 months ago · JSON representation

Repository

R client for TaxonWorks

Basic Info

Host: GitHub
Owner: SpeciesFileGroup
License: mit
Language: R
Default Branch: main
Homepage:
Size: 313 KB

Statistics

Stars: 1
Watchers: 2
Forks: 1
Open Issues: 1
Releases: 1

Created over 2 years ago · Last pushed over 1 year ago

Metadata Files

Readme Changelog Contributing License Codemeta

README.Rmd

rtaxonworks
====

```{r echo=FALSE}
knitr::opts_chunk$set(
  comment = "#>",
  collapse = TRUE,
  warning = FALSE,
  message = FALSE
)
```



[![Project Status: WIP – Initial development is in progress, but there has not yet been a stable, usable release suitable for the public.](https://www.repostatus.org/badges/latest/wip.svg)](https://www.repostatus.org/#wip)
[![R-CMD-check](https://github.com/SpeciesFileGroup/rtaxonworks/workflows/R-CMD-check/badge.svg)](https://github.com/SpeciesFileGroup/rtaxonworks/actions)
[![rstudio mirror downloads](https://cranlogs.r-pkg.org/badges/rtaxonworks)](https://github.com/r-hub/cranlogs.app)
[![cran version](https://www.r-pkg.org/badges/version/rtaxonworks)](https://cran.r-project.org/package=rtaxonworks)

`rtaxonworks` is an R client for the [TaxonWorks](https://taxonworks.org) API. Code follow the spirit/approach of the Gem [rcol](https://github.com/sckott/rcol), and indeed much of the wrapping utility is copied 1:1 from that repo, thanks [@sckott](https://github.com/sckott).


Package documentation: https://docs.taxonworks.org/r

* TaxonWorks: https://taxonworks.org
* TaxonWorks GitHub repository: https://github.com/SpeciesFileGroup/taxonworks
* TaxonWorks API docs: https://api.taxonworks.org
* TaxonWorks documentation: https://docs.taxonworks.org

## Installation

```{r eval=FALSE}
install.packages("rtaxonworks")
```

Install the development version from GitHub with:

```{r eval=FALSE} 
install.packages("remotes")
remotes::install_github("SpeciesFileGroup/rtaxonworks")
```

Load the package
```{r eval=FALSE}
library("rtaxonworks")
```

## Contributing

Bug reports and pull requests are welcome on GitHub at https://github.com/SpeciesFileGroup/rtaxonworks. This project is intended to be a safe, welcoming space for collaboration, and contributors are expected to adhere to the [code of conduct](https://github.com/SpeciesFileGroup/rtaxonworks/blob/main/CODE_OF_CONDUCT.md).

## Development

Please read the [CONTRIBUTING guide](CONTRIBUTING.md) for instructions on how to install the development version.

## License

The gem is available as open source under the terms of the [MIT license](https://github.com/SpeciesFileGroup/rtaxonworks/blob/main/LICENSE.txt). You can learn more about the MIT license on [Wikipedia](https://en.wikipedia.org/wiki/MIT_License) and compare it with other open source licenses at the [Open Source Initiative](https://opensource.org/license/mit/).

## Code of Conduct

Everyone interacting in the rtaxonworks project's codebases, issue trackers, chat rooms and mailing lists is expected to follow the [code of conduct](https://github.com/SpeciesFileGroup/rtaxonworks/blob/main/CODE_OF_CONDUCT.md).

Owner

Name: Species File Group
Login: SpeciesFileGroup
Kind: organization
Location: University of Illinois, INHS

Website: http://speciesfilegroup.org
Repositories: 55
Profile: https://github.com/SpeciesFileGroup

A biodiversity informatics research group.

CodeMeta (codemeta.json)

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  "description": "Client for TaxonWorks\n    (<https://www.taxonworks.org/>); a web application for managing biodiversity data, in particular taxonomic data. TaxonWorks is a Rails application, and this package provides an R interface to the TaxonWorks API.",
  "name": "rtaxonworks: TaxonWorks Client",
  "codeRepository": "https://github.com/SpeciesFileGroup/rtaxonworks",
  "relatedLink": "https://api.taxonworks.org",
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  "license": "https://spdx.org/licenses/MIT",
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      "givenName": "Geoff",
      "familyName": "Ower",
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    }
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  "funder": [
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    },
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      "sameAs": "https://CRAN.R-project.org/package=tibble"
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  "applicationCategory": "Biology",
  "isPartOf": "https://taxonworks.org",
  "keywords": [
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  "releaseNotes": "https://github.com/SpeciesFileGroup/rtaxonworks/blob/master/NEWS.md",
  "readme": "https://github.com/SpeciesFileGroup/rtaxonworks/blob/master/README.md",
  "fileSize": "212.515KB",
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}

GitHub Events

Total

Push event: 1

Last Year

Push event: 1

Committers

Last synced: about 1 year ago

All Time

Total Commits: 39
Total Committers: 1
Avg Commits per committer: 39.0
Development Distribution Score (DDS): 0.0

Past Year

Commits: 14
Committers: 1
Avg Commits per committer: 14.0
Development Distribution Score (DDS): 0.0

Top Committers

Name	Email	Commits
Geoff Ower	g**r@i**u	39

Committer Domains (Top 20 + Academic)

illinois.edu: 1

Issues and Pull Requests

Last synced: about 1 year ago

All Time

Total issues: 6
Total pull requests: 1
Average time to close issues: 29 days
Average time to close pull requests: about 4 hours
Total issue authors: 2
Total pull request authors: 1
Average comments per issue: 0.83
Average comments per pull request: 0.0
Merged pull requests: 1
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 3
Pull requests: 0
Average time to close issues: 13 days
Average time to close pull requests: N/A
Issue authors: 1
Pull request authors: 0
Average comments per issue: 0.33
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

gdower (3)
bonushenricus (3)

Pull Request Authors

gdower (1)

Top Labels

Issue Labels

bug (2) enhancement (1)

Pull Request Labels

Dependencies

.github/workflows/R-CMD-check.yaml actions

actions/cache v2 composite
actions/checkout v4 composite
actions/upload-artifact v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite

DESCRIPTION cran

data.table * imports
httr2 * imports
jsonlite * imports
tibble * imports
testthat * suggests
vcr * suggests

check/rtaxonworks.Rcheck/00_pkg_src/rtaxonworks/DESCRIPTION cran

data.table * imports
httr2 * imports
jsonlite * imports
tibble * imports
testthat * suggests
vcr * suggests

check/rtaxonworks.Rcheck/rtaxonworks/DESCRIPTION cran

data.table * imports
httr2 * imports
jsonlite * imports
tibble * imports
testthat * suggests
vcr * suggests

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

rtaxonworks

Science Score: 36.0%

Repository

Basic Info

Statistics

Metadata Files

README.Rmd

Owner

CodeMeta (codemeta.json)

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Dependencies