https://github.com/cosmoquester/torch-lightning-template
This repository is template for my pytorch lightning project.
https://github.com/cjabradshaw/kipigcull
R code to simulate effect of different culling regimes on feral pig populations on Kangaroo Island, South Australia
unifiedagentprotocol
The Unified Agent Protocol (UAP) is an open interoperability layer for defining, registering, executing, and orchestrating AI agents and tools across diverse ecosystems. It standardizes how agents and tools are described and translated between platforms like LangChain, OpenWebUI, OpenAPI, and MCP — enabling portable, composable, and vendor-neutral
https://github.com/cjabradshaw/journalrankshiny
This R Shiny app provides a κ-resampled composite journal rank incorporating six user-supplied citation indices
scdnalong
Pipeline for processing of single-cell long read DNA data. For example data obtained through 10X-style barcoding of DNA and then sequenced on ONT/PacBio machines.
stylo
Nanopore assembly workflow from basecalled reads to polished assembly plus assembly QC, metrics, and plasmid replicon detection
https://github.com/cjabradshaw/whitesharkdeterrents
R code to analysis deterrent trials for devices used to reduce the incidence of white shark (Carcharodon carcharias) attacks
python_package_template
An opinionated template to easily turn your Python code into a package on pip, conda, and include many nice features like a documentation website, and style checks.