https://github.com/biocore/q2-mislabeled • Science 13%

A QIIME 2 plugin for assessing sample mislabeling and contamination

https://github.com/biocore/pysyndna • Science 36%

Python implementation and extension of SynDNA ("a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing", Zaramela et al., mSystems 2022

https://github.com/biocore/validation-notebooks • Science 13%

A collection of various validation notebooks

https://github.com/biocore/unifrac-binaries • Science 49%

https://github.com/biocore/microsetta-interface • Science 26%

The Microsetta participant facing user interface

https://github.com/biocore/microsetta-private-api • Science 26%

A private microservice to support The Microsetta Initiative

https://github.com/biocore/qiime-default-reference • Science 23%

Default reference data files for use with QIIME.

https://github.com/biocore/taxster • Science 13%

taxster: assigning taxonomy to organisms you've never even heard of

https://github.com/biocore/q2-katharoseq • Science 49%

https://github.com/biocore/deicode • Science 10%

Robust Aitchison PCA from sparse count data

https://github.com/biocore/micronota • Science 26%

annotation pipeline for microbial genomes and metagenomes

https://github.com/biocore/songbird • Science 20%

Vanilla regression methods for microbiome differential abundance analysis

https://github.com/biocore/q2-downloader • Science 13%

https://github.com/biocore/wetlab-assistant • Science 13%

https://github.com/biocore/q2-pressius • Science 13%

A QIIME2 plugin for benchmarking high precision genome matching from amplicon data

https://github.com/biocore/biocore.github.io • Science 13%

https://github.com/biocro/framework • Science 13%

https://github.com/biocypher/decider-genetics • Science 13%

https://github.com/biocypher/dependency-map • Science 13%

https://github.com/biocypher/biocypher-mcp • Science 26%