AMLTK
AMLTK: A Modular AutoML Toolkit in Python - Published in JOSS (2024)
AMReX
AMReX: a framework for block-structured adaptive mesh refinement - Published in JOSS (2019)
UltraNest - a robust, general purpose Bayesian inference engine
UltraNest - a robust, general purpose Bayesian inference engine - Published in JOSS (2021)
Pylinac
Pylinac: Image analysis for routine quality assurance in radiotherapy - Published in JOSS (2023)
Bempp-cl
Bempp-cl: A fast Python based just-in-time compiling boundary element library. - Published in JOSS (2021)
The Causal Testing Framework
The Causal Testing Framework - Published in JOSS (2025)
The pdb2sql Python Package
The pdb2sql Python Package: Parsing, Manipulation and Analysis of PDB Files Using SQL Queries - Published in JOSS (2020)
Pyglmnet
Pyglmnet: Python implementation of elastic-net regularized generalized linear models - Published in JOSS (2020)
fqfa
fqfa: A pure Python package for genomic sequence files - Published in JOSS (2020)
py-pde
py-pde: A Python package for solving partial differential equations - Published in JOSS (2020)
ETHOS.FINE
ETHOS.FINE: A Framework for Integrated Energy System Assessment - Published in JOSS (2025)
Efficient Polyhedral Gravity Modeling in Modern C++ and Python
Efficient Polyhedral Gravity Modeling in Modern C++ and Python - Published in JOSS (2024)
Micro Manager
Micro Manager: a Python package for adaptive and flexible two-scale coupling - Published in JOSS (2023)
https://github.com/juliageo/cftime.jl
Julia library for decoding time units conforming to the Climate and Forecasting (CF) netCDF conventions.
Turftopic
Turftopic: Topic Modelling with Contextual Representations from Sentence Transformers - Published in JOSS (2025)
OnlineStats.jl
OnlineStats.jl: A Julia package for statistics on data streams - Published in JOSS (2020)
DeepRank2
DeepRank2: Mining 3D Protein Structures with Geometric Deep Learning - Published in JOSS (2024)
modelbased
modelbased: An R package to make the most out of your statistical models through marginal means, marginal effects, and model predictions - Published in JOSS (2025)