https://github.com/coinfabrik/scout-substrate-dataset-code
Tagged archive of audited project code for the Scout Substrate Dataset, with .zip/.tar.gz downloads and full history for Substrate blockchain audits.
https://github.com/cokelaer/graphviz4all
dot and other graphviz executable in a simple singularity container
https://github.com/cokelaer/rnaseq
RNA-seq, QC and differential analysis pipeline
https://github.com/cokelaer/multiqc
Aggregate results from bioinformatics analyses across many samples into a single report.
https://github.com/cokelaer/gdsctools
Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
https://github.com/cokelaer/fastqc
sequana pipeline to perform parallel fastqc and summarize results with multiqc plot
https://github.com/cokelaer/defi-bioinfo
Statistical exploration of codon usage
https://github.com/cokelaer/bioconvert
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
https://github.com/csbg/tfcf
Systematic functional screening of chromatin factors identifies strong lineage and disease dependencies in normal and malignant haematopoiesis.
https://github.com/csbg/hands-on-biomedical-data
Practical exercises for the course "Hands-on Biomedical Data - Resources and Analysis Tools"
https://github.com/csbiology/tmea
Thermodynamically Motivated Enrichment Analysis (TMEA) is a new approach to gene set enrichment analysis.
https://github.com/csbiology/csbscaffold
Basic scaffold for biological data analysis using FSharp
https://github.com/csbiology/fsdocker
F# Client for Docker Remote API based on Docker.DotNet Project
https://github.com/csbiology/mzio
Generic data model to unify various readers and writers for different formats used in protein mass spectrometry
https://github.com/csbiology/dataframe
data frame library for .NET based on ML.NET IDataView