https://github.com/aniketm3/personalwebsite
config files for personal portfolio
https://github.com/anikfal/west_asia_dust_source
New dust soruces (soil erodibility) for West Asia
https://github.com/anilbey/splatter-paper
Data and analysis for the Splatter paper
https://github.com/anilbey/connectomemapper3
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, and resting/state functional MRI processing pipelines, from raw T1 / DWI / BOLD data to multi-resolution brain parcellation with corresponding connection matrices.
https://github.com/animesh/scripts
Miscellaneous scripts moved from https://code.google.com/p/misccb/
https://github.com/animesh/pseudomonas_align_strains
compare the genome of ATCC 27853 (Cao et al., 2017) with that of the ST235 strain used in this study (Urbanowicz et al., 2021)
https://github.com/animesh/gsea
Replicate: Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles https://www.pnas.org/doi/10.1073/pnas.0506580102
https://github.com/animesh/evo2
Genome modeling and design across all domains of life
https://github.com/animesh/auto-gdpr-accept
Auto Accept GDPR / Reject Cookie Banners Chrome Extension
https://github.com/animesh/nextflow_rnaseq
A nextflow pipeline analyzes paired-end mRNA-seq data to generate raw count tables and quality control reports.
https://github.com/animesh/iq
An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
https://github.com/animesh/pysnail
Smooth-quantile Normalization Adaptation for Inference of co-expression Links
https://github.com/animesh/yhydra
yHydra is a GPU-accelerated open search for MS-based proteomics data.
https://github.com/animesh/wgcna_tutorial
A step-by-step tutorial for Weighted correlation network analysis (WGCNA)
https://github.com/animesh/spacexr
Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics