https://github.com/broadinstitute/celldega_files_of_ist_benchmarking_paper_data
This repo contains a Landscape files for Celldega visualization. The data was originally collected for the paper: Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues.
https://github.com/broadinstitute/pattern-storybook
https://github.com/broadinstitute/bibt-libraries
A small project linking out to our various PyPI projects.
outdated_rezoom_lab_website_template
ReZoom website with "Lab Website Template" by Greene Lab
https://github.com/broadinstitute/xenium_v1_human_pancreas_ffpe_outs
This repo contains a test dataset for Celldega. The data was obtained from 10X Genomics Inc Data: https://www.10xgenomics.com/datasets/
https://github.com/broadinstitute/igv.js
Embeddable genomic visualization component based on the Integrative Genomics Viewer
https://github.com/broadinstitute/xenium_prime_ovarian_cancer_ffpe_xrrun_outs
Celldega Landscape files of a public dataset: Xenium_Prime_Ovarian_Cancer_FFPE_XRrun_outs
https://github.com/broadinstitute/pangenome-pipelines
Terra WDL pipelines using the Human Pangenome Reference Graph
2024-04-12-unix_shell
Pilot workshop based on https://librarycarpentry.org/lc-shell/ for Broad Computing Basics series
https://github.com/broadinstitute/python-alteon
Python interface to the Radware Alteon REST API