AstronomicAL
AstronomicAL: an interactive dashboard for visualisation, integration and classification of data with Active Learning - Published in JOSS (2021)
The Generalized Green's function Cluster Expansion
The Generalized Green's function Cluster Expansion: A Python package for simulating polarons - Published in JOSS (2023)
Mantik
Mantik: A Workflow Platform for the Development of Artificial Intelligence on High-Performance Computing Infrastructures - Published in JOSS (2024)
Computing diffusion coefficients in macromolecular simulations
Computing diffusion coefficients in macromolecular simulations: the Diffusion Coefficient Tool for VMD - Published in JOSS (2019)
simode
simode: R Package for Statistical Inference of Ordinary Differential Equations using Separable Integral-Matching - Published in JOSS (2019)
ADaPT-ML
ADaPT-ML: A Data Programming Template for Machine Learning - Published in JOSS (2022)
reper
reper: Genome-wide identification, classification and quantification of repetitive elements without an assembled genome - Published in JOSS (2018)
model-traits
model-traits: Model attribute definitions for scientific simulations in C++ - Published in JOSS (2021)
Phylen
Phylen: automatic phylogenetic reconstruction using the EggNOG database - Published in JOSS (2018)
fastSF
fastSF: A parallel code for computing the structure functions of turbulence - Published in JOSS (2021)
EndoMineR for the extraction of endoscopic and associated pathology data from medical reports
EndoMineR for the extraction of endoscopic and associated pathology data from medical reports - Published in JOSS (2018)
Py-school-match
Py-school-match: Matching algorithms to assign students to schools - Published in JOSS (2019)
IntrinsicTimescales.jl: A Julia package to estimate intrinsic (neural) timescales (INTs) from time-series data
IntrinsicTimescales.jl: A Julia package to estimate intrinsic (neural) timescales (INTs) from time-series data - Published in JOSS (2025)
connected-components-3d
Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)
Open Computational Chemistry (OCC) - A portable software library and program for quantum chemistry and crystallography
Open Computational Chemistry (OCC) - A portable software library and program for quantum chemistry and crystallography - Published in JOSS (2026)
virtualNicheR
virtualNicheR: generating virtual fundamental and realised niches for use in virtual ecology experiments - Published in JOSS (2019)
cwl_runner
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
Enhanced software and platform for the Town Energy Balance (TEB) model
Enhanced software and platform for the Town Energy Balance (TEB) model - Published in JOSS (2020)