KinESim
KinESim: Pre-equilibrium kinetic simulation of electrochemical reactions - Published in JOSS (2019)
APAV
APAV: An Open-Source Python Package for Mass Spectrum Analysis in Atom Probe Tomography - Published in JOSS (2023)
cf-units
Units of measure as required by the Climate and Forecast (CF) Metadata Conventions
pytreedb
Python package providing a file and object-based database to store tree objects.
REMix
REMix: A GAMS-based framework for optimizing energy system models - Published in JOSS (2024)
GPJax
GPJax: A Gaussian Process Framework in JAX - Published in JOSS (2022)
Copernicus Seasonal Forecast Tools Package: Bridging Seasonal Climate Predictions and Impact Models for Operational Risk Assessment
Copernicus Seasonal Forecast Tools Package: Bridging Seasonal Climate Predictions and Impact Models for Operational Risk Assessment - Published in JOSS (2026)
Mapelia and friends
Mapelia and friends: create 3D models from maps - Published in JOSS (2018)
ACHR.cu
ACHR.cu: GPU-accelerated sampling of metabolic networks - Published in JOSS (2019)
pyransac3d
A python tool for fitting primitives 3D shapes in point clouds using RANSAC algorithm
amici
High-performance sensitivity analysis for large ordinary differential equation models
Melissa
Melissa: coordinating large-scale ensemble runs for deep learning and sensitivity analyses - Published in JOSS (2023)
https://github.com/cytoscape/cytoscape.js
Graph theory (network) library for visualisation and analysis
IdentityByDescentDispersal.jl: Inferring dispersal rates with identity-by-descent blocks
IdentityByDescentDispersal.jl: Inferring dispersal rates with identity-by-descent blocks - Published in JOSS (2026)
PySWMM
PySWMM: The Python Interface to Stormwater Management Model (SWMM) - Published in JOSS (2020)
gladia-torchaudio
Data manipulation and transformation for audio signal processing, powered by PyTorch