“Blaster” – a graphical user interface for common sequence analysis tools
“Blaster” – a graphical user interface for common sequence analysis tools - Published in JOSS (2019)
Bramble
Bramble: adaptive common neighbor analysis (CNA) for the recognition of surface topologies in nanoparticles - Published in JOSS (2023)
TidyTensor
TidyTensor: Utilities for multidimensional arrays as named hierarchical structures - Published in JOSS (2021)
CytobankAPIstats
CytobankAPIstats: Computes Signaling and Population Statistics for Cytometry Data on Cytobank using 'CytobankAPI' - Published in JOSS (2019)
Multivariate Covariance Generalized Linear Models in Python
Multivariate Covariance Generalized Linear Models in Python: The mcglm library - Published in JOSS (2024)
ordPens
ordPens: An R package for Selection, Smoothing and Principal Components Analysis for Ordinal Variables - Published in JOSS (2021)
YAD
YAD: A Learning-based Inductive Logic Programming Tool - Published in JOSS (2018)
ogs6py and VTUinterface
ogs6py and VTUinterface: streamlining OpenGeoSys workflows in Python - Published in JOSS (2021)
eights
eights: BS 8888:2011 first angle projection drawings from FreeCAD 3D model - Published in JOSS (2019)
catalystcoop.pudl
The Public Utility Data Liberation Project provides analysis-ready energy system data to climate advocates, researchers, policymakers, and journalists.
BayesFlow
BayesFlow: Amortized Bayesian Workflows With Neural Networks - Published in JOSS (2023)
compas-cra
Coupled Rigid-Block Analysis: Stability-Aware Design of Complex Discrete-Element Assemblies
pastas
Pastas is an open-source Python framework for the analysis of groundwater time series.
pyFBS
pyFBS: A Python package for Frequency Based Substructuring - Published in JOSS (2022)
edsnlp
Modular, fast NLP framework, compatible with Pytorch and spaCy, offering tailored support for French clinical notes.
r3f
r3f: Rotation of 3-dimensional Reference Frames - Published in JOSS (2025)