RISE
RISE: An R package for RISE analysis - Published in JOSS (2018)
qmflows
This library tackles the construction and efficient execution of computational chemistry workflows
imaging-server-kit
Deploy image processing algorithms in FastAPI servers and easily run them in Napari, QuPath, and more.
The MarINvaders Toolkit
The MarINvaders Toolkit - Published in JOSS (2021)
Kamodo
Kamodo: A functional API for space weather models and data - Published in JOSS (2022)
gLBM
gLBM: A GPU enabled Lattice Boltzmann Method Library - Published in JOSS (2022)
integron_finder
Bioinformatics tool to find integrons in bacterial genomes
topoptlab: An Open and Modular Framework for Benchmarking and Research in Topology Optimization
topoptlab: An Open and Modular Framework for Benchmarking and Research in Topology Optimization - Published in JOSS (2026)
ccompass
A Neural Network Tool for Multi-Omic Classification of Cell Compartments
foyer
A package for atom-typing as well as applying and disseminating forcefields
shimmy
An API conversion tool for popular external reinforcement learning environments
Underworld3
Underworld3: Mathematically Self-Describing Modelling in Python for Desktop, HPC and Cloud - Published in JOSS (2025)
parpe
Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.